Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04240

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04235 and AZOBR_RS04240 are separated by 75 nucleotidesAZOBR_RS04240 and AZOBR_RS04245 are separated by 4 nucleotides AZOBR_RS04235: AZOBR_RS04235 - glutamyl-tRNA synthetase, at 892,058 to 893,416 _RS04235 AZOBR_RS04240: AZOBR_RS04240 - cysteinyl-tRNA synthetase, at 893,492 to 894,865 _RS04240 AZOBR_RS04245: AZOBR_RS04245 - putative acyltransferase 3, at 894,870 to 896,066 _RS04245 Position (kb) 893 894 895Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 894.871 kb on + strandat 894.871 kb on + strandat 895.114 kb on + strand, within AZOBR_RS04245at 895.115 kb on - strand, within AZOBR_RS04245at 895.123 kb on + strand, within AZOBR_RS04245at 895.124 kb on - strand, within AZOBR_RS04245at 895.124 kb on - strand, within AZOBR_RS04245at 895.124 kb on - strand, within AZOBR_RS04245at 895.124 kb on - strand, within AZOBR_RS04245at 895.306 kb on + strand, within AZOBR_RS04245at 895.307 kb on - strand, within AZOBR_RS04245at 895.307 kb on - strand, within AZOBR_RS04245at 895.307 kb on - strand, within AZOBR_RS04245at 895.658 kb on - strand, within AZOBR_RS04245

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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894,871 + -1.8
894,871 + +1.4
895,114 + AZOBR_RS04245 0.20 -0.0
895,115 - AZOBR_RS04245 0.20 +3.2
895,123 + AZOBR_RS04245 0.21 +1.5
895,124 - AZOBR_RS04245 0.21 -1.1
895,124 - AZOBR_RS04245 0.21 -4.0
895,124 - AZOBR_RS04245 0.21 +0.0
895,124 - AZOBR_RS04245 0.21 +2.4
895,306 + AZOBR_RS04245 0.36 +0.8
895,307 - AZOBR_RS04245 0.37 -0.4
895,307 - AZOBR_RS04245 0.37 -0.4
895,307 - AZOBR_RS04245 0.37 +0.2
895,658 - AZOBR_RS04245 0.66 +1.5

Or see this region's nucleotide sequence