Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04220 and AZOBR_RS04225 are separated by 142 nucleotides AZOBR_RS04225 and AZOBR_RS04230 are separated by 99 nucleotides AZOBR_RS04230 and AZOBR_RS04235 are separated by 402 nucleotides
AZOBR_RS04220: AZOBR_RS04220 - hypothetical protein, at 888,538 to 889,107
_RS04220
AZOBR_RS04225: AZOBR_RS04225 - isoprenoid biosynthesis protein, at 889,250 to 889,918
_RS04225
AZOBR_RS04230: AZOBR_RS04230 - indole-3-pyruvate decarboxylase, at 890,018 to 891,655
_RS04230
AZOBR_RS04235: AZOBR_RS04235 - glutamyl-tRNA synthetase, at 892,058 to 893,416
_RS04235
Position (kb) 890
891
892 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 889.163 kb on + strand at 889.251 kb on + strand at 889.252 kb on - strand at 889.329 kb on + strand, within AZOBR_RS04225 at 889.329 kb on + strand, within AZOBR_RS04225 at 889.329 kb on + strand, within AZOBR_RS04225 at 889.330 kb on - strand, within AZOBR_RS04225 at 889.330 kb on - strand, within AZOBR_RS04225 at 889.330 kb on - strand, within AZOBR_RS04225 at 889.330 kb on - strand, within AZOBR_RS04225 at 889.867 kb on - strand at 889.867 kb on - strand at 889.867 kb on - strand at 889.983 kb on - strand at 889.983 kb on - strand at 889.999 kb on + strand at 889.999 kb on + strand at 889.999 kb on + strand at 890.000 kb on - strand at 890.000 kb on - strand at 890.005 kb on + strand at 890.019 kb on + strand at 890.721 kb on + strand, within AZOBR_RS04230 at 890.730 kb on + strand, within AZOBR_RS04230 at 890.895 kb on + strand, within AZOBR_RS04230 at 890.896 kb on - strand, within AZOBR_RS04230 at 890.896 kb on - strand, within AZOBR_RS04230 at 890.896 kb on - strand, within AZOBR_RS04230 at 890.896 kb on - strand, within AZOBR_RS04230 at 891.009 kb on + strand, within AZOBR_RS04230 at 891.396 kb on + strand, within AZOBR_RS04230 at 891.441 kb on + strand, within AZOBR_RS04230 at 891.441 kb on + strand, within AZOBR_RS04230 at 891.442 kb on - strand, within AZOBR_RS04230 at 891.442 kb on - strand, within AZOBR_RS04230 at 891.442 kb on - strand, within AZOBR_RS04230 at 892.017 kb on + strand at 892.017 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 889,163 + +0.1 889,251 + -0.5 889,252 - +0.6 889,329 + AZOBR_RS04225 0.12 -0.9 889,329 + AZOBR_RS04225 0.12 -1.1 889,329 + AZOBR_RS04225 0.12 +0.9 889,330 - AZOBR_RS04225 0.12 +1.1 889,330 - AZOBR_RS04225 0.12 +0.2 889,330 - AZOBR_RS04225 0.12 +2.0 889,330 - AZOBR_RS04225 0.12 +0.7 889,867 - +0.4 889,867 - +0.9 889,867 - -3.8 889,983 - -0.7 889,983 - -3.0 889,999 + +0.1 889,999 + +0.4 889,999 + -3.0 890,000 - +0.2 890,000 - -0.1 890,005 + +0.9 890,019 + +0.8 890,721 + AZOBR_RS04230 0.43 +1.4 890,730 + AZOBR_RS04230 0.43 -0.6 890,895 + AZOBR_RS04230 0.54 -1.3 890,896 - AZOBR_RS04230 0.54 +2.0 890,896 - AZOBR_RS04230 0.54 -1.3 890,896 - AZOBR_RS04230 0.54 -1.7 890,896 - AZOBR_RS04230 0.54 -0.9 891,009 + AZOBR_RS04230 0.61 +1.2 891,396 + AZOBR_RS04230 0.84 -0.5 891,441 + AZOBR_RS04230 0.87 +1.5 891,441 + AZOBR_RS04230 0.87 +1.2 891,442 - AZOBR_RS04230 0.87 -1.4 891,442 - AZOBR_RS04230 0.87 +0.1 891,442 - AZOBR_RS04230 0.87 -1.3 892,017 + -1.7 892,017 + -1.0
Or see this region's nucleotide sequence