Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03865

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03860 and AZOBR_RS03865 are separated by 256 nucleotidesAZOBR_RS03865 and AZOBR_RS00005 are separated by 133 nucleotidesAZOBR_RS00005 and AZOBR_RS03870 are separated by 96 nucleotides AZOBR_RS03860: AZOBR_RS03860 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 814,878 to 815,648 _RS03860 AZOBR_RS03865: AZOBR_RS03865 - cytochrome C, at 815,905 to 816,444 _RS03865 AZOBR_RS00005: AZOBR_RS00005 - SRP_bact, at 816,578 to 816,680 _RS00005 AZOBR_RS03870: AZOBR_RS03870 - DNA polymerase III subunit gamma/tau, at 816,777 to 818,633 _RS03870 Position (kb) 815 816 817Strain fitness (log2 ratio) -1 0 1at 816.316 kb on + strand, within AZOBR_RS03865at 816.687 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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816,316 + AZOBR_RS03865 0.76 +1.7
816,687 + +0.7

Or see this region's nucleotide sequence