Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03390 and AZOBR_RS03395 are separated by 260 nucleotides AZOBR_RS03395 and AZOBR_RS03400 are separated by 77 nucleotides AZOBR_RS03400 and AZOBR_RS03405 are separated by 88 nucleotides
AZOBR_RS03390: AZOBR_RS03390 - protein tyrosine kinase, at 719,427 to 721,700
_RS03390
AZOBR_RS03395: AZOBR_RS03395 - Crp/Fnr family transcriptional regulator, at 721,961 to 722,629
_RS03395
AZOBR_RS03400: AZOBR_RS03400 - membrane protein, at 722,707 to 722,898
_RS03400
AZOBR_RS03405: AZOBR_RS03405 - transcriptional regulator, at 722,987 to 723,745
_RS03405
Position (kb) 721
722
723 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 721.033 kb on + strand, within AZOBR_RS03390 at 721.033 kb on + strand, within AZOBR_RS03390 at 721.033 kb on + strand, within AZOBR_RS03390 at 721.034 kb on - strand, within AZOBR_RS03390 at 721.034 kb on - strand, within AZOBR_RS03390 at 721.108 kb on + strand, within AZOBR_RS03390 at 721.108 kb on + strand, within AZOBR_RS03390 at 721.273 kb on + strand, within AZOBR_RS03390 at 721.273 kb on + strand, within AZOBR_RS03390 at 721.273 kb on + strand, within AZOBR_RS03390 at 721.274 kb on - strand, within AZOBR_RS03390 at 721.274 kb on - strand, within AZOBR_RS03390 at 721.438 kb on + strand, within AZOBR_RS03390 at 721.439 kb on - strand, within AZOBR_RS03390 at 721.492 kb on + strand at 721.568 kb on + strand at 721.745 kb on + strand at 721.745 kb on + strand at 721.754 kb on + strand at 721.755 kb on - strand at 721.755 kb on - strand at 721.755 kb on - strand at 721.755 kb on - strand at 721.800 kb on + strand at 721.800 kb on + strand at 721.801 kb on - strand at 721.801 kb on - strand at 721.801 kb on - strand at 721.801 kb on - strand at 722.234 kb on + strand, within AZOBR_RS03395 at 722.695 kb on + strand at 722.696 kb on - strand at 722.696 kb on - strand at 722.857 kb on + strand, within AZOBR_RS03400 at 722.857 kb on + strand, within AZOBR_RS03400 at 722.857 kb on + strand, within AZOBR_RS03400 at 722.858 kb on - strand, within AZOBR_RS03400 at 722.977 kb on + strand at 722.977 kb on + strand at 722.977 kb on + strand at 722.978 kb on - strand at 722.978 kb on - strand at 723.027 kb on - strand at 723.027 kb on - strand at 723.305 kb on + strand at 723.305 kb on + strand, within AZOBR_RS03405
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 721,033 + AZOBR_RS03390 0.71 +0.2 721,033 + AZOBR_RS03390 0.71 -0.1 721,033 + AZOBR_RS03390 0.71 -1.5 721,034 - AZOBR_RS03390 0.71 +2.3 721,034 - AZOBR_RS03390 0.71 -4.6 721,108 + AZOBR_RS03390 0.74 -0.1 721,108 + AZOBR_RS03390 0.74 +1.1 721,273 + AZOBR_RS03390 0.81 -1.5 721,273 + AZOBR_RS03390 0.81 +1.2 721,273 + AZOBR_RS03390 0.81 -2.7 721,274 - AZOBR_RS03390 0.81 +0.8 721,274 - AZOBR_RS03390 0.81 -1.7 721,438 + AZOBR_RS03390 0.88 +2.9 721,439 - AZOBR_RS03390 0.88 -1.1 721,492 + -0.2 721,568 + +0.2 721,745 + -0.3 721,745 + -0.2 721,754 + -0.3 721,755 - -2.6 721,755 - +0.6 721,755 - +2.5 721,755 - -2.7 721,800 + -3.4 721,800 + -0.6 721,801 - +0.1 721,801 - -2.9 721,801 - +0.3 721,801 - -1.0 722,234 + AZOBR_RS03395 0.41 +1.1 722,695 + +2.6 722,696 - -2.5 722,696 - -0.8 722,857 + AZOBR_RS03400 0.78 +0.2 722,857 + AZOBR_RS03400 0.78 +1.3 722,857 + AZOBR_RS03400 0.78 +0.7 722,858 - AZOBR_RS03400 0.79 +2.1 722,977 + -4.0 722,977 + +0.9 722,977 + +1.4 722,978 - -0.7 722,978 - +0.3 723,027 - +0.7 723,027 - +0.2 723,305 + +0.1 723,305 + AZOBR_RS03405 0.42 -2.2
Or see this region's nucleotide sequence