Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03385 and AZOBR_RS03390 are separated by 150 nucleotides AZOBR_RS03390 and AZOBR_RS03395 are separated by 260 nucleotides
AZOBR_RS03385: AZOBR_RS03385 - polysaccharide biosynthesis protein, at 717,831 to 719,276
_RS03385
AZOBR_RS03390: AZOBR_RS03390 - protein tyrosine kinase, at 719,427 to 721,700
_RS03390
AZOBR_RS03395: AZOBR_RS03395 - Crp/Fnr family transcriptional regulator, at 721,961 to 722,629
_RS03395
Position (kb) 719
720
721
722 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 718.876 kb on + strand, within AZOBR_RS03385 at 718.982 kb on - strand, within AZOBR_RS03385 at 718.982 kb on - strand, within AZOBR_RS03385 at 719.083 kb on + strand, within AZOBR_RS03385 at 719.438 kb on - strand at 719.438 kb on - strand at 719.441 kb on - strand at 719.692 kb on + strand, within AZOBR_RS03390 at 719.693 kb on - strand, within AZOBR_RS03390 at 720.109 kb on + strand, within AZOBR_RS03390 at 720.109 kb on + strand, within AZOBR_RS03390 at 720.110 kb on - strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.409 kb on + strand, within AZOBR_RS03390 at 720.410 kb on - strand, within AZOBR_RS03390 at 720.410 kb on - strand, within AZOBR_RS03390 at 720.410 kb on - strand, within AZOBR_RS03390 at 720.410 kb on - strand, within AZOBR_RS03390 at 720.652 kb on + strand, within AZOBR_RS03390 at 720.652 kb on + strand, within AZOBR_RS03390 at 720.653 kb on - strand, within AZOBR_RS03390 at 720.832 kb on + strand, within AZOBR_RS03390 at 720.832 kb on + strand, within AZOBR_RS03390 at 720.832 kb on + strand, within AZOBR_RS03390 at 720.832 kb on + strand, within AZOBR_RS03390 at 720.914 kb on - strand, within AZOBR_RS03390 at 721.033 kb on + strand, within AZOBR_RS03390 at 721.033 kb on + strand, within AZOBR_RS03390 at 721.033 kb on + strand, within AZOBR_RS03390 at 721.034 kb on - strand, within AZOBR_RS03390 at 721.034 kb on - strand, within AZOBR_RS03390 at 721.108 kb on + strand, within AZOBR_RS03390 at 721.108 kb on + strand, within AZOBR_RS03390 at 721.273 kb on + strand, within AZOBR_RS03390 at 721.273 kb on + strand, within AZOBR_RS03390 at 721.273 kb on + strand, within AZOBR_RS03390 at 721.274 kb on - strand, within AZOBR_RS03390 at 721.274 kb on - strand, within AZOBR_RS03390 at 721.438 kb on + strand, within AZOBR_RS03390 at 721.439 kb on - strand, within AZOBR_RS03390 at 721.492 kb on + strand at 721.568 kb on + strand at 721.745 kb on + strand at 721.745 kb on + strand at 721.754 kb on + strand at 721.755 kb on - strand at 721.755 kb on - strand at 721.755 kb on - strand at 721.755 kb on - strand at 721.800 kb on + strand at 721.800 kb on + strand at 721.801 kb on - strand at 721.801 kb on - strand at 721.801 kb on - strand at 721.801 kb on - strand at 722.234 kb on + strand, within AZOBR_RS03395 at 722.695 kb on + strand at 722.696 kb on - strand at 722.696 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 718,876 + AZOBR_RS03385 0.72 -1.0 718,982 - AZOBR_RS03385 0.80 -1.6 718,982 - AZOBR_RS03385 0.80 +1.0 719,083 + AZOBR_RS03385 0.87 +0.1 719,438 - +0.2 719,438 - -0.2 719,441 - +0.9 719,692 + AZOBR_RS03390 0.12 +1.9 719,693 - AZOBR_RS03390 0.12 +1.0 720,109 + AZOBR_RS03390 0.30 -1.6 720,109 + AZOBR_RS03390 0.30 +0.0 720,110 - AZOBR_RS03390 0.30 +0.1 720,409 + AZOBR_RS03390 0.43 +0.8 720,409 + AZOBR_RS03390 0.43 -0.6 720,409 + AZOBR_RS03390 0.43 +0.0 720,409 + AZOBR_RS03390 0.43 -0.1 720,409 + AZOBR_RS03390 0.43 +0.3 720,409 + AZOBR_RS03390 0.43 -3.1 720,409 + AZOBR_RS03390 0.43 +0.9 720,409 + AZOBR_RS03390 0.43 -0.4 720,410 - AZOBR_RS03390 0.43 +0.4 720,410 - AZOBR_RS03390 0.43 +0.0 720,410 - AZOBR_RS03390 0.43 -0.9 720,410 - AZOBR_RS03390 0.43 -3.2 720,652 + AZOBR_RS03390 0.54 +2.2 720,652 + AZOBR_RS03390 0.54 +0.5 720,653 - AZOBR_RS03390 0.54 +0.2 720,832 + AZOBR_RS03390 0.62 +0.3 720,832 + AZOBR_RS03390 0.62 +0.7 720,832 + AZOBR_RS03390 0.62 +0.8 720,832 + AZOBR_RS03390 0.62 -3.2 720,914 - AZOBR_RS03390 0.65 +1.3 721,033 + AZOBR_RS03390 0.71 +0.2 721,033 + AZOBR_RS03390 0.71 -0.1 721,033 + AZOBR_RS03390 0.71 -1.5 721,034 - AZOBR_RS03390 0.71 +2.3 721,034 - AZOBR_RS03390 0.71 -4.6 721,108 + AZOBR_RS03390 0.74 -0.1 721,108 + AZOBR_RS03390 0.74 +1.1 721,273 + AZOBR_RS03390 0.81 -1.5 721,273 + AZOBR_RS03390 0.81 +1.2 721,273 + AZOBR_RS03390 0.81 -2.7 721,274 - AZOBR_RS03390 0.81 +0.8 721,274 - AZOBR_RS03390 0.81 -1.7 721,438 + AZOBR_RS03390 0.88 +2.9 721,439 - AZOBR_RS03390 0.88 -1.1 721,492 + -0.2 721,568 + +0.2 721,745 + -0.3 721,745 + -0.2 721,754 + -0.3 721,755 - -2.6 721,755 - +0.6 721,755 - +2.5 721,755 - -2.7 721,800 + -3.4 721,800 + -0.6 721,801 - +0.1 721,801 - -2.9 721,801 - +0.3 721,801 - -1.0 722,234 + AZOBR_RS03395 0.41 +1.1 722,695 + +2.6 722,696 - -2.5 722,696 - -0.8
Or see this region's nucleotide sequence