Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03370 and AZOBR_RS03375 are separated by 13 nucleotides AZOBR_RS03375 and AZOBR_RS03380 are separated by 53 nucleotides
AZOBR_RS03370: AZOBR_RS03370 - GDP-L-fucose synthase, at 714,196 to 715,176
_RS03370
AZOBR_RS03375: AZOBR_RS03375 - NAD-dependent dehydratase, at 715,190 to 716,191
_RS03375
AZOBR_RS03380: AZOBR_RS03380 - UDP-glucose 6-dehydrogenase, at 716,245 to 717,600
_RS03380
Position (kb) 715
716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 714.275 kb on + strand at 714.276 kb on - strand at 714.405 kb on - strand, within AZOBR_RS03370 at 714.491 kb on + strand, within AZOBR_RS03370 at 714.491 kb on + strand, within AZOBR_RS03370 at 714.492 kb on - strand, within AZOBR_RS03370 at 714.492 kb on - strand, within AZOBR_RS03370 at 714.537 kb on - strand, within AZOBR_RS03370 at 714.674 kb on + strand, within AZOBR_RS03370 at 714.674 kb on + strand, within AZOBR_RS03370 at 714.767 kb on + strand, within AZOBR_RS03370 at 714.768 kb on - strand, within AZOBR_RS03370 at 715.001 kb on + strand, within AZOBR_RS03370 at 715.001 kb on + strand, within AZOBR_RS03370 at 715.002 kb on - strand, within AZOBR_RS03370 at 715.002 kb on - strand, within AZOBR_RS03370 at 715.192 kb on - strand at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.452 kb on + strand, within AZOBR_RS03375 at 715.453 kb on - strand, within AZOBR_RS03375 at 715.453 kb on - strand, within AZOBR_RS03375 at 715.453 kb on - strand, within AZOBR_RS03375 at 715.453 kb on - strand, within AZOBR_RS03375 at 715.651 kb on - strand, within AZOBR_RS03375 at 715.743 kb on + strand, within AZOBR_RS03375 at 715.750 kb on - strand, within AZOBR_RS03375 at 715.822 kb on - strand, within AZOBR_RS03375 at 715.936 kb on - strand, within AZOBR_RS03375 at 715.936 kb on - strand, within AZOBR_RS03375 at 715.936 kb on - strand, within AZOBR_RS03375 at 716.179 kb on - strand at 716.351 kb on + strand at 716.351 kb on + strand at 716.351 kb on + strand at 716.352 kb on - strand at 716.352 kb on - strand at 716.352 kb on - strand at 716.352 kb on - strand at 716.957 kb on + strand, within AZOBR_RS03380 at 716.957 kb on + strand, within AZOBR_RS03380 at 716.958 kb on - strand, within AZOBR_RS03380 at 716.958 kb on - strand, within AZOBR_RS03380 at 716.958 kb on - strand, within AZOBR_RS03380
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 714,275 + +1.2 714,276 - +0.2 714,405 - AZOBR_RS03370 0.21 -0.1 714,491 + AZOBR_RS03370 0.30 -0.1 714,491 + AZOBR_RS03370 0.30 -0.3 714,492 - AZOBR_RS03370 0.30 +1.5 714,492 - AZOBR_RS03370 0.30 -0.2 714,537 - AZOBR_RS03370 0.35 -0.5 714,674 + AZOBR_RS03370 0.49 +0.7 714,674 + AZOBR_RS03370 0.49 -0.4 714,767 + AZOBR_RS03370 0.58 +0.6 714,768 - AZOBR_RS03370 0.58 -0.4 715,001 + AZOBR_RS03370 0.82 +0.3 715,001 + AZOBR_RS03370 0.82 +0.6 715,002 - AZOBR_RS03370 0.82 +0.5 715,002 - AZOBR_RS03370 0.82 -1.3 715,192 - +0.3 715,452 + AZOBR_RS03375 0.26 -0.1 715,452 + AZOBR_RS03375 0.26 -0.0 715,452 + AZOBR_RS03375 0.26 -1.1 715,452 + AZOBR_RS03375 0.26 -0.1 715,452 + AZOBR_RS03375 0.26 -1.7 715,452 + AZOBR_RS03375 0.26 -2.4 715,452 + AZOBR_RS03375 0.26 -1.5 715,453 - AZOBR_RS03375 0.26 +2.8 715,453 - AZOBR_RS03375 0.26 -2.8 715,453 - AZOBR_RS03375 0.26 -1.2 715,453 - AZOBR_RS03375 0.26 +0.6 715,651 - AZOBR_RS03375 0.46 -0.7 715,743 + AZOBR_RS03375 0.55 -1.2 715,750 - AZOBR_RS03375 0.56 +0.6 715,822 - AZOBR_RS03375 0.63 +1.5 715,936 - AZOBR_RS03375 0.74 +1.0 715,936 - AZOBR_RS03375 0.74 -0.0 715,936 - AZOBR_RS03375 0.74 +0.5 716,179 - +1.2 716,351 + -3.0 716,351 + +0.5 716,351 + -0.7 716,352 - +0.5 716,352 - -0.9 716,352 - -1.4 716,352 - +0.5 716,957 + AZOBR_RS03380 0.53 +0.2 716,957 + AZOBR_RS03380 0.53 -0.1 716,958 - AZOBR_RS03380 0.53 +2.0 716,958 - AZOBR_RS03380 0.53 +0.4 716,958 - AZOBR_RS03380 0.53 +1.0
Or see this region's nucleotide sequence