Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03190 and AZOBR_RS03195 are separated by 73 nucleotides AZOBR_RS03195 and AZOBR_RS03200 are separated by 165 nucleotides AZOBR_RS03200 and AZOBR_RS03205 are separated by 242 nucleotides AZOBR_RS03205 and AZOBR_RS03210 are separated by 283 nucleotides
AZOBR_RS03190: AZOBR_RS03190 - aerobic cobaltochelatase subunit CobS, at 679,173 to 680,177
_RS03190
AZOBR_RS03195: AZOBR_RS03195 - molecular chaperone DnaJ, at 680,251 to 680,835
_RS03195
AZOBR_RS03200: AZOBR_RS03200 - BolA family transcriptional regulator, at 681,001 to 681,273
_RS03200
AZOBR_RS03205: AZOBR_RS03205 - hypothetical protein, at 681,516 to 681,857
_RS03205
AZOBR_RS03210: AZOBR_RS03210 - hypothetical protein, at 682,141 to 682,755
_RS03210
Position (kb) 681
682 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 680.184 kb on + strand at 680.188 kb on + strand at 680.188 kb on + strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.261 kb on + strand at 680.261 kb on + strand at 680.261 kb on + strand at 680.262 kb on - strand at 680.282 kb on + strand at 680.282 kb on + strand at 680.283 kb on - strand at 680.646 kb on - strand, within AZOBR_RS03195 at 680.648 kb on + strand, within AZOBR_RS03195 at 680.648 kb on + strand, within AZOBR_RS03195 at 680.649 kb on - strand, within AZOBR_RS03195 at 680.649 kb on - strand, within AZOBR_RS03195 at 680.666 kb on + strand, within AZOBR_RS03195 at 680.696 kb on + strand, within AZOBR_RS03195 at 680.696 kb on + strand, within AZOBR_RS03195 at 680.697 kb on - strand, within AZOBR_RS03195 at 680.697 kb on - strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.799 kb on - strand at 680.813 kb on + strand at 680.844 kb on + strand at 680.845 kb on - strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.193 kb on + strand, within AZOBR_RS03200 at 681.194 kb on - strand, within AZOBR_RS03200 at 681.342 kb on + strand at 681.343 kb on - strand at 681.346 kb on + strand at 681.346 kb on + strand at 681.426 kb on + strand at 681.515 kb on + strand at 681.545 kb on - strand at 682.050 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.064 kb on - strand at 682.064 kb on - strand at 682.064 kb on - strand at 682.079 kb on - strand at 682.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 680,184 + -0.7 680,188 + -1.7 680,188 + -2.3 680,189 - -1.6 680,189 - +0.8 680,189 - -2.0 680,189 - -2.0 680,261 + -1.7 680,261 + -0.0 680,261 + -3.5 680,262 - -1.3 680,282 + -0.1 680,282 + -3.9 680,283 - -0.1 680,646 - AZOBR_RS03195 0.68 +0.1 680,648 + AZOBR_RS03195 0.68 +0.1 680,648 + AZOBR_RS03195 0.68 +1.0 680,649 - AZOBR_RS03195 0.68 +0.6 680,649 - AZOBR_RS03195 0.68 +0.1 680,666 + AZOBR_RS03195 0.71 -0.2 680,696 + AZOBR_RS03195 0.76 -0.3 680,696 + AZOBR_RS03195 0.76 +0.0 680,697 - AZOBR_RS03195 0.76 -0.8 680,697 - AZOBR_RS03195 0.76 +0.6 680,699 + AZOBR_RS03195 0.77 +0.1 680,699 + AZOBR_RS03195 0.77 -0.2 680,699 + AZOBR_RS03195 0.77 +0.9 680,799 - +1.2 680,813 + -1.9 680,844 + -3.0 680,845 - +1.5 681,007 + -1.7 681,007 + +2.2 681,007 + -4.0 681,008 - +0.0 681,008 - -1.0 681,008 - -1.1 681,008 - -1.9 681,193 + AZOBR_RS03200 0.70 -0.3 681,194 - AZOBR_RS03200 0.71 -0.6 681,342 + +0.9 681,343 - +1.6 681,346 + -0.8 681,346 + -0.5 681,426 + +0.4 681,515 + -1.3 681,545 - -3.4 682,050 + -0.8 682,063 + -1.9 682,063 + +1.0 682,063 + +1.7 682,063 + +0.1 682,064 - +0.8 682,064 - -0.1 682,064 - +0.9 682,079 - -3.8 682,175 + -2.3
Or see this region's nucleotide sequence