Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03180 and AZOBR_RS03185 overlap by 4 nucleotides AZOBR_RS03185 and AZOBR_RS03190 are separated by 33 nucleotides AZOBR_RS03190 and AZOBR_RS03195 are separated by 73 nucleotides AZOBR_RS03195 and AZOBR_RS03200 are separated by 165 nucleotides
AZOBR_RS03180: AZOBR_RS03180 - hypothetical protein, at 678,481 to 678,876
_RS03180
AZOBR_RS03185: AZOBR_RS03185 - putative transcriptional regulator AbrB family, at 678,873 to 679,139
_RS03185
AZOBR_RS03190: AZOBR_RS03190 - aerobic cobaltochelatase subunit CobS, at 679,173 to 680,177
_RS03190
AZOBR_RS03195: AZOBR_RS03195 - molecular chaperone DnaJ, at 680,251 to 680,835
_RS03195
AZOBR_RS03200: AZOBR_RS03200 - BolA family transcriptional regulator, at 681,001 to 681,273
_RS03200
Position (kb) 679
680
681 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 678.677 kb on - strand, within AZOBR_RS03180 at 678.677 kb on - strand, within AZOBR_RS03180 at 678.677 kb on - strand, within AZOBR_RS03180 at 678.677 kb on - strand, within AZOBR_RS03180 at 678.677 kb on - strand, within AZOBR_RS03180 at 678.677 kb on - strand, within AZOBR_RS03180 at 679.132 kb on + strand at 679.133 kb on - strand at 679.232 kb on - strand at 679.235 kb on - strand at 679.504 kb on + strand, within AZOBR_RS03190 at 679.504 kb on + strand, within AZOBR_RS03190 at 679.505 kb on - strand, within AZOBR_RS03190 at 679.505 kb on - strand, within AZOBR_RS03190 at 679.570 kb on + strand, within AZOBR_RS03190 at 680.184 kb on + strand at 680.188 kb on + strand at 680.188 kb on + strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.261 kb on + strand at 680.261 kb on + strand at 680.261 kb on + strand at 680.262 kb on - strand at 680.282 kb on + strand at 680.282 kb on + strand at 680.283 kb on - strand at 680.646 kb on - strand, within AZOBR_RS03195 at 680.648 kb on + strand, within AZOBR_RS03195 at 680.648 kb on + strand, within AZOBR_RS03195 at 680.649 kb on - strand, within AZOBR_RS03195 at 680.649 kb on - strand, within AZOBR_RS03195 at 680.666 kb on + strand, within AZOBR_RS03195 at 680.696 kb on + strand, within AZOBR_RS03195 at 680.696 kb on + strand, within AZOBR_RS03195 at 680.697 kb on - strand, within AZOBR_RS03195 at 680.697 kb on - strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.799 kb on - strand at 680.813 kb on + strand at 680.844 kb on + strand at 680.845 kb on - strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 678,677 - AZOBR_RS03180 0.49 +1.3 678,677 - AZOBR_RS03180 0.49 +1.1 678,677 - AZOBR_RS03180 0.49 +0.3 678,677 - AZOBR_RS03180 0.49 -0.5 678,677 - AZOBR_RS03180 0.49 -0.9 678,677 - AZOBR_RS03180 0.49 -0.3 679,132 + -0.9 679,133 - -3.6 679,232 - +1.1 679,235 - -3.5 679,504 + AZOBR_RS03190 0.33 -2.2 679,504 + AZOBR_RS03190 0.33 -0.8 679,505 - AZOBR_RS03190 0.33 -2.7 679,505 - AZOBR_RS03190 0.33 -3.9 679,570 + AZOBR_RS03190 0.40 -2.2 680,184 + -0.7 680,188 + -1.7 680,188 + -2.3 680,189 - -1.6 680,189 - +0.8 680,189 - -2.0 680,189 - -2.0 680,261 + -1.7 680,261 + -0.0 680,261 + -3.5 680,262 - -1.3 680,282 + -0.1 680,282 + -3.9 680,283 - -0.1 680,646 - AZOBR_RS03195 0.68 +0.1 680,648 + AZOBR_RS03195 0.68 +0.1 680,648 + AZOBR_RS03195 0.68 +1.0 680,649 - AZOBR_RS03195 0.68 +0.6 680,649 - AZOBR_RS03195 0.68 +0.1 680,666 + AZOBR_RS03195 0.71 -0.2 680,696 + AZOBR_RS03195 0.76 -0.3 680,696 + AZOBR_RS03195 0.76 +0.0 680,697 - AZOBR_RS03195 0.76 -0.8 680,697 - AZOBR_RS03195 0.76 +0.6 680,699 + AZOBR_RS03195 0.77 +0.1 680,699 + AZOBR_RS03195 0.77 -0.2 680,699 + AZOBR_RS03195 0.77 +0.9 680,799 - +1.2 680,813 + -1.9 680,844 + -3.0 680,845 - +1.5 681,007 + -1.7 681,007 + +2.2 681,007 + -4.0 681,008 - +0.0 681,008 - -1.0 681,008 - -1.1 681,008 - -1.9
Or see this region's nucleotide sequence