Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02965 and AZOBR_RS02970 are separated by 11 nucleotides AZOBR_RS02970 and AZOBR_RS02975 are separated by 331 nucleotides AZOBR_RS02975 and AZOBR_RS02980 are separated by 7 nucleotides
AZOBR_RS02965: AZOBR_RS02965 - DNA polymerase III subunit epsilon, at 629,387 to 630,007
_RS02965
AZOBR_RS02970: AZOBR_RS02970 - DNA mismatch repair protein MutT, at 630,019 to 630,609
_RS02970
AZOBR_RS02975: AZOBR_RS02975 - hypothetical protein, at 630,941 to 631,960
_RS02975
AZOBR_RS02980: AZOBR_RS02980 - ABC transporter permease, at 631,968 to 633,296
_RS02980
Position (kb) 630
631
632 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 630.140 kb on + strand, within AZOBR_RS02970 at 630.140 kb on + strand, within AZOBR_RS02970 at 630.141 kb on - strand, within AZOBR_RS02970 at 630.141 kb on - strand, within AZOBR_RS02970 at 630.389 kb on + strand, within AZOBR_RS02970 at 630.389 kb on + strand, within AZOBR_RS02970 at 630.390 kb on - strand, within AZOBR_RS02970 at 630.491 kb on + strand, within AZOBR_RS02970 at 630.557 kb on + strand at 630.557 kb on + strand at 630.642 kb on + strand at 630.643 kb on - strand at 630.674 kb on + strand at 630.674 kb on + strand at 630.674 kb on + strand at 630.674 kb on + strand at 630.675 kb on - strand at 630.675 kb on - strand at 630.675 kb on - strand at 630.676 kb on + strand at 630.676 kb on + strand at 630.676 kb on + strand at 630.676 kb on + strand at 630.677 kb on - strand at 630.860 kb on + strand at 630.860 kb on + strand at 630.869 kb on - strand at 631.020 kb on - strand at 631.379 kb on + strand, within AZOBR_RS02975 at 631.379 kb on + strand, within AZOBR_RS02975 at 631.379 kb on + strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.700 kb on + strand, within AZOBR_RS02975 at 631.701 kb on - strand, within AZOBR_RS02975 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.163 kb on - strand, within AZOBR_RS02980 at 632.323 kb on + strand, within AZOBR_RS02980 at 632.443 kb on + strand, within AZOBR_RS02980 at 632.443 kb on + strand, within AZOBR_RS02980 at 632.444 kb on - strand, within AZOBR_RS02980 at 632.444 kb on - strand, within AZOBR_RS02980 at 632.743 kb on + strand, within AZOBR_RS02980 at 632.743 kb on + strand, within AZOBR_RS02980 at 632.744 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.833 kb on + strand, within AZOBR_RS02980 at 632.834 kb on - strand, within AZOBR_RS02980 at 632.834 kb on - strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.951 kb on - strand, within AZOBR_RS02980
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 630,140 + AZOBR_RS02970 0.20 -0.2 630,140 + AZOBR_RS02970 0.20 -2.2 630,141 - AZOBR_RS02970 0.21 -0.8 630,141 - AZOBR_RS02970 0.21 +1.0 630,389 + AZOBR_RS02970 0.63 +1.9 630,389 + AZOBR_RS02970 0.63 -0.3 630,390 - AZOBR_RS02970 0.63 -1.7 630,491 + AZOBR_RS02970 0.80 +1.4 630,557 + -2.2 630,557 + +0.2 630,642 + +0.7 630,643 - +1.8 630,674 + -3.3 630,674 + +0.5 630,674 + -0.0 630,674 + -3.8 630,675 - -0.5 630,675 - -0.0 630,675 - -3.2 630,676 + +0.7 630,676 + -2.5 630,676 + +0.9 630,676 + -3.7 630,677 - -0.4 630,860 + +0.6 630,860 + +0.5 630,869 - +0.1 631,020 - +2.4 631,379 + AZOBR_RS02975 0.43 +1.9 631,379 + AZOBR_RS02975 0.43 +2.3 631,379 + AZOBR_RS02975 0.43 +0.2 631,380 - AZOBR_RS02975 0.43 -0.1 631,380 - AZOBR_RS02975 0.43 -0.1 631,380 - AZOBR_RS02975 0.43 +0.5 631,380 - AZOBR_RS02975 0.43 -0.6 631,700 + AZOBR_RS02975 0.74 -1.7 631,701 - AZOBR_RS02975 0.75 +0.3 632,162 + AZOBR_RS02980 0.15 -2.0 632,162 + AZOBR_RS02980 0.15 -2.1 632,162 + AZOBR_RS02980 0.15 -1.4 632,163 - AZOBR_RS02980 0.15 -0.2 632,323 + AZOBR_RS02980 0.27 +0.7 632,443 + AZOBR_RS02980 0.36 +0.8 632,443 + AZOBR_RS02980 0.36 -0.1 632,444 - AZOBR_RS02980 0.36 -0.4 632,444 - AZOBR_RS02980 0.36 +0.0 632,743 + AZOBR_RS02980 0.58 +2.2 632,743 + AZOBR_RS02980 0.58 +0.6 632,744 - AZOBR_RS02980 0.58 -1.4 632,750 - AZOBR_RS02980 0.59 -4.2 632,750 - AZOBR_RS02980 0.59 -3.1 632,750 - AZOBR_RS02980 0.59 -2.9 632,750 - AZOBR_RS02980 0.59 -1.2 632,833 + AZOBR_RS02980 0.65 -3.3 632,834 - AZOBR_RS02980 0.65 -2.0 632,834 - AZOBR_RS02980 0.65 +0.3 632,950 + AZOBR_RS02980 0.74 -3.2 632,950 + AZOBR_RS02980 0.74 -1.1 632,950 + AZOBR_RS02980 0.74 +0.9 632,950 + AZOBR_RS02980 0.74 +2.6 632,950 + AZOBR_RS02980 0.74 +2.5 632,950 + AZOBR_RS02980 0.74 -0.1 632,950 + AZOBR_RS02980 0.74 -4.1 632,951 - AZOBR_RS02980 0.74 -2.3
Or see this region's nucleotide sequence