Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02945 and AZOBR_RS02950 are separated by 114 nucleotides AZOBR_RS02950 and AZOBR_RS02955 are separated by 35 nucleotides AZOBR_RS02955 and AZOBR_RS02960 are separated by 184 nucleotides
AZOBR_RS02945: AZOBR_RS02945 - hypothetical protein, at 623,936 to 625,753
_RS02945
AZOBR_RS02950: AZOBR_RS02950 - hypothetical protein, at 625,868 to 626,353
_RS02950
AZOBR_RS02955: AZOBR_RS02955 - histidine kinase, at 626,389 to 628,077
_RS02955
AZOBR_RS02960: AZOBR_RS02960 - methylthioribose-1-phosphate isomerase, at 628,262 to 629,362
_RS02960
Position (kb) 626
627
628
629 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 625.731 kb on - strand at 625.731 kb on - strand at 626.093 kb on + strand, within AZOBR_RS02950 at 626.096 kb on + strand, within AZOBR_RS02950 at 626.096 kb on + strand, within AZOBR_RS02950 at 626.096 kb on + strand, within AZOBR_RS02950 at 626.097 kb on - strand, within AZOBR_RS02950 at 626.190 kb on - strand, within AZOBR_RS02950 at 626.190 kb on - strand, within AZOBR_RS02950 at 626.193 kb on - strand, within AZOBR_RS02950 at 626.223 kb on - strand, within AZOBR_RS02950 at 626.295 kb on - strand, within AZOBR_RS02950 at 626.324 kb on + strand at 626.325 kb on - strand at 626.388 kb on - strand at 626.837 kb on + strand, within AZOBR_RS02955 at 626.838 kb on - strand, within AZOBR_RS02955 at 626.838 kb on - strand, within AZOBR_RS02955 at 626.838 kb on - strand, within AZOBR_RS02955 at 626.877 kb on - strand, within AZOBR_RS02955 at 627.126 kb on - strand, within AZOBR_RS02955 at 627.126 kb on - strand, within AZOBR_RS02955 at 627.126 kb on - strand, within AZOBR_RS02955 at 627.126 kb on - strand, within AZOBR_RS02955 at 627.126 kb on - strand, within AZOBR_RS02955 at 627.224 kb on + strand, within AZOBR_RS02955 at 627.224 kb on + strand, within AZOBR_RS02955 at 627.225 kb on - strand, within AZOBR_RS02955 at 627.233 kb on + strand, within AZOBR_RS02955 at 627.233 kb on + strand, within AZOBR_RS02955 at 627.233 kb on + strand, within AZOBR_RS02955 at 627.234 kb on - strand, within AZOBR_RS02955 at 627.234 kb on - strand, within AZOBR_RS02955 at 627.234 kb on - strand, within AZOBR_RS02955 at 627.234 kb on - strand, within AZOBR_RS02955 at 627.234 kb on - strand, within AZOBR_RS02955 at 627.444 kb on - strand, within AZOBR_RS02955 at 627.464 kb on + strand, within AZOBR_RS02955 at 627.479 kb on + strand, within AZOBR_RS02955 at 627.479 kb on + strand, within AZOBR_RS02955 at 627.572 kb on + strand, within AZOBR_RS02955 at 627.572 kb on + strand, within AZOBR_RS02955 at 627.572 kb on + strand, within AZOBR_RS02955 at 627.647 kb on + strand, within AZOBR_RS02955 at 627.647 kb on + strand, within AZOBR_RS02955 at 627.647 kb on + strand, within AZOBR_RS02955 at 627.743 kb on + strand, within AZOBR_RS02955 at 627.744 kb on - strand, within AZOBR_RS02955 at 627.771 kb on - strand, within AZOBR_RS02955 at 628.034 kb on + strand at 628.034 kb on + strand at 628.034 kb on + strand at 628.176 kb on - strand at 628.206 kb on + strand at 628.207 kb on - strand at 628.207 kb on - strand at 628.254 kb on + strand at 628.254 kb on + strand at 628.255 kb on - strand at 628.255 kb on - strand at 628.255 kb on - strand at 628.261 kb on + strand at 628.262 kb on - strand at 628.262 kb on - strand at 628.284 kb on - strand at 628.805 kb on + strand, within AZOBR_RS02960 at 628.806 kb on - strand, within AZOBR_RS02960 at 629.036 kb on + strand, within AZOBR_RS02960 at 629.036 kb on + strand, within AZOBR_RS02960 at 629.036 kb on + strand, within AZOBR_RS02960 at 629.037 kb on - strand, within AZOBR_RS02960
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 625,731 - -0.2 625,731 - -1.8 626,093 + AZOBR_RS02950 0.46 +0.0 626,096 + AZOBR_RS02950 0.47 +0.8 626,096 + AZOBR_RS02950 0.47 -2.9 626,096 + AZOBR_RS02950 0.47 +0.1 626,097 - AZOBR_RS02950 0.47 +0.7 626,190 - AZOBR_RS02950 0.66 +0.1 626,190 - AZOBR_RS02950 0.66 -2.8 626,193 - AZOBR_RS02950 0.67 +0.7 626,223 - AZOBR_RS02950 0.73 -0.8 626,295 - AZOBR_RS02950 0.88 -1.9 626,324 + -1.9 626,325 - +0.4 626,388 - +1.7 626,837 + AZOBR_RS02955 0.27 -3.4 626,838 - AZOBR_RS02955 0.27 -1.4 626,838 - AZOBR_RS02955 0.27 +0.5 626,838 - AZOBR_RS02955 0.27 -4.0 626,877 - AZOBR_RS02955 0.29 -1.1 627,126 - AZOBR_RS02955 0.44 -0.3 627,126 - AZOBR_RS02955 0.44 -0.4 627,126 - AZOBR_RS02955 0.44 -0.6 627,126 - AZOBR_RS02955 0.44 +0.6 627,126 - AZOBR_RS02955 0.44 -0.5 627,224 + AZOBR_RS02955 0.49 -0.7 627,224 + AZOBR_RS02955 0.49 +0.9 627,225 - AZOBR_RS02955 0.49 +0.3 627,233 + AZOBR_RS02955 0.50 -0.3 627,233 + AZOBR_RS02955 0.50 +0.1 627,233 + AZOBR_RS02955 0.50 -0.2 627,234 - AZOBR_RS02955 0.50 +0.2 627,234 - AZOBR_RS02955 0.50 +4.4 627,234 - AZOBR_RS02955 0.50 -0.9 627,234 - AZOBR_RS02955 0.50 +0.6 627,234 - AZOBR_RS02955 0.50 -3.6 627,444 - AZOBR_RS02955 0.62 -2.9 627,464 + AZOBR_RS02955 0.64 -3.0 627,479 + AZOBR_RS02955 0.65 -0.2 627,479 + AZOBR_RS02955 0.65 +0.0 627,572 + AZOBR_RS02955 0.70 +0.3 627,572 + AZOBR_RS02955 0.70 +0.2 627,572 + AZOBR_RS02955 0.70 +0.2 627,647 + AZOBR_RS02955 0.74 +1.0 627,647 + AZOBR_RS02955 0.74 -1.8 627,647 + AZOBR_RS02955 0.74 +1.2 627,743 + AZOBR_RS02955 0.80 -1.7 627,744 - AZOBR_RS02955 0.80 +0.4 627,771 - AZOBR_RS02955 0.82 +1.4 628,034 + -0.1 628,034 + -0.2 628,034 + -0.9 628,176 - +0.4 628,206 + +1.1 628,207 - +0.0 628,207 - +1.1 628,254 + +0.9 628,254 + -0.9 628,255 - +0.6 628,255 - +0.3 628,255 - -3.8 628,261 + -3.2 628,262 - +0.4 628,262 - -4.3 628,284 - -3.6 628,805 + AZOBR_RS02960 0.49 -0.6 628,806 - AZOBR_RS02960 0.49 +0.5 629,036 + AZOBR_RS02960 0.70 -0.6 629,036 + AZOBR_RS02960 0.70 -0.4 629,036 + AZOBR_RS02960 0.70 +0.3 629,037 - AZOBR_RS02960 0.70 +1.6
Or see this region's nucleotide sequence