Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02925 and AZOBR_RS02930 are separated by 131 nucleotides AZOBR_RS02930 and AZOBR_RS02935 are separated by 218 nucleotides AZOBR_RS02935 and AZOBR_RS02940 overlap by 1 nucleotides
AZOBR_RS02925: AZOBR_RS02925 - SAM-dependent methyltransferase PhcB, at 620,300 to 620,920
_RS02925
AZOBR_RS02930: AZOBR_RS02930 - hypothetical protein, at 621,052 to 621,579
_RS02930
AZOBR_RS02935: AZOBR_RS02935 - small component of pyruvate transporter (yjcH-like) <small>(from data)</small>, at 621,798 to 622,100
_RS02935
AZOBR_RS02940: AZOBR_RS02940 - large component of pyruvate transporter (actP-like) <small>(from data)</small>, at 622,100 to 623,818
_RS02940
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 621.004 kb on + strand at 621.004 kb on + strand at 621.004 kb on + strand at 621.005 kb on - strand at 621.005 kb on - strand at 621.005 kb on - strand at 621.121 kb on + strand, within AZOBR_RS02930 at 621.121 kb on + strand, within AZOBR_RS02930 at 621.122 kb on - strand, within AZOBR_RS02930 at 621.122 kb on - strand, within AZOBR_RS02930 at 621.460 kb on + strand, within AZOBR_RS02930 at 621.596 kb on - strand at 621.596 kb on - strand at 621.596 kb on - strand at 621.632 kb on + strand at 621.797 kb on + strand at 621.797 kb on + strand at 621.798 kb on - strand at 621.860 kb on + strand, within AZOBR_RS02935 at 621.903 kb on + strand, within AZOBR_RS02935 at 621.904 kb on - strand, within AZOBR_RS02935 at 621.904 kb on - strand, within AZOBR_RS02935 at 622.035 kb on + strand, within AZOBR_RS02935 at 622.035 kb on + strand, within AZOBR_RS02935 at 622.035 kb on + strand, within AZOBR_RS02935 at 622.035 kb on + strand, within AZOBR_RS02935 at 622.035 kb on + strand, within AZOBR_RS02935 at 622.036 kb on - strand, within AZOBR_RS02935 at 622.036 kb on - strand, within AZOBR_RS02935 at 622.268 kb on + strand at 622.268 kb on + strand at 622.269 kb on - strand at 622.308 kb on - strand, within AZOBR_RS02940 at 622.308 kb on - strand, within AZOBR_RS02940 at 622.364 kb on + strand, within AZOBR_RS02940 at 622.364 kb on + strand, within AZOBR_RS02940 at 622.364 kb on + strand, within AZOBR_RS02940 at 622.364 kb on + strand, within AZOBR_RS02940 at 622.364 kb on + strand, within AZOBR_RS02940 at 622.365 kb on - strand, within AZOBR_RS02940 at 622.365 kb on - strand, within AZOBR_RS02940 at 622.508 kb on + strand, within AZOBR_RS02940 at 622.508 kb on + strand, within AZOBR_RS02940 at 622.508 kb on + strand, within AZOBR_RS02940 at 622.508 kb on + strand, within AZOBR_RS02940 at 622.509 kb on - strand, within AZOBR_RS02940 at 622.532 kb on + strand, within AZOBR_RS02940 at 622.533 kb on - strand, within AZOBR_RS02940 at 622.598 kb on + strand, within AZOBR_RS02940 at 622.598 kb on + strand, within AZOBR_RS02940 at 622.598 kb on + strand, within AZOBR_RS02940 at 622.599 kb on - strand, within AZOBR_RS02940 at 622.599 kb on - strand, within AZOBR_RS02940 at 622.599 kb on - strand, within AZOBR_RS02940 at 622.599 kb on - strand, within AZOBR_RS02940 at 622.701 kb on - strand, within AZOBR_RS02940 at 623.016 kb on - strand, within AZOBR_RS02940 at 623.016 kb on - strand, within AZOBR_RS02940 at 623.036 kb on + strand, within AZOBR_RS02940 at 623.042 kb on + strand, within AZOBR_RS02940 at 623.042 kb on + strand, within AZOBR_RS02940
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 621,004 + +1.3 621,004 + +0.3 621,004 + +0.4 621,005 - -0.9 621,005 - +2.1 621,005 - -0.1 621,121 + AZOBR_RS02930 0.13 -0.1 621,121 + AZOBR_RS02930 0.13 +0.4 621,122 - AZOBR_RS02930 0.13 -0.1 621,122 - AZOBR_RS02930 0.13 -2.8 621,460 + AZOBR_RS02930 0.77 -2.0 621,596 - -1.2 621,596 - -0.9 621,596 - +0.3 621,632 + -0.3 621,797 + +1.2 621,797 + +1.0 621,798 - +2.0 621,860 + AZOBR_RS02935 0.20 +0.3 621,903 + AZOBR_RS02935 0.35 +2.0 621,904 - AZOBR_RS02935 0.35 +1.2 621,904 - AZOBR_RS02935 0.35 +1.0 622,035 + AZOBR_RS02935 0.78 -2.0 622,035 + AZOBR_RS02935 0.78 -0.8 622,035 + AZOBR_RS02935 0.78 +1.5 622,035 + AZOBR_RS02935 0.78 +1.2 622,035 + AZOBR_RS02935 0.78 +0.9 622,036 - AZOBR_RS02935 0.79 +0.8 622,036 - AZOBR_RS02935 0.79 +1.1 622,268 + +1.5 622,268 + +1.1 622,269 - +1.2 622,308 - AZOBR_RS02940 0.12 +0.2 622,308 - AZOBR_RS02940 0.12 +1.2 622,364 + AZOBR_RS02940 0.15 +1.9 622,364 + AZOBR_RS02940 0.15 +1.7 622,364 + AZOBR_RS02940 0.15 +1.0 622,364 + AZOBR_RS02940 0.15 +0.5 622,364 + AZOBR_RS02940 0.15 +2.7 622,365 - AZOBR_RS02940 0.15 +0.5 622,365 - AZOBR_RS02940 0.15 +1.5 622,508 + AZOBR_RS02940 0.24 -1.6 622,508 + AZOBR_RS02940 0.24 +1.1 622,508 + AZOBR_RS02940 0.24 +1.5 622,508 + AZOBR_RS02940 0.24 -0.4 622,509 - AZOBR_RS02940 0.24 +0.3 622,532 + AZOBR_RS02940 0.25 +0.9 622,533 - AZOBR_RS02940 0.25 -0.9 622,598 + AZOBR_RS02940 0.29 +1.9 622,598 + AZOBR_RS02940 0.29 +1.0 622,598 + AZOBR_RS02940 0.29 +2.2 622,599 - AZOBR_RS02940 0.29 +0.9 622,599 - AZOBR_RS02940 0.29 -0.2 622,599 - AZOBR_RS02940 0.29 +1.2 622,599 - AZOBR_RS02940 0.29 +0.8 622,701 - AZOBR_RS02940 0.35 +1.1 623,016 - AZOBR_RS02940 0.53 +0.7 623,016 - AZOBR_RS02940 0.53 +1.2 623,036 + AZOBR_RS02940 0.54 +1.1 623,042 + AZOBR_RS02940 0.55 +1.3 623,042 + AZOBR_RS02940 0.55 -0.6
Or see this region's nucleotide sequence