Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01770 and AZOBR_RS01775 overlap by 8 nucleotides AZOBR_RS01775 and AZOBR_RS01780 are separated by 41 nucleotides AZOBR_RS01780 and AZOBR_RS01785 are separated by 21 nucleotides AZOBR_RS01785 and AZOBR_RS01790 are separated by 40 nucleotides
AZOBR_RS01770: AZOBR_RS01770 - dephospho-CoA kinase, at 360,488 to 361,132
_RS01770
AZOBR_RS01775: AZOBR_RS01775 - DNA polymerase III subunit epsilon, at 361,125 to 361,802
_RS01775
AZOBR_RS01780: AZOBR_RS01780 - quinone oxidoreductase, at 361,844 to 362,818
_RS01780
AZOBR_RS01785: AZOBR_RS01785 - cysteine methyltransferase, at 362,840 to 363,325
_RS01785
AZOBR_RS01790: AZOBR_RS01790 - hypothetical protein, at 363,366 to 365,384
_RS01790
Position (kb) 361
362
363 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 361.103 kb on + strand at 361.103 kb on + strand at 361.248 kb on + strand, within AZOBR_RS01775 at 361.249 kb on - strand, within AZOBR_RS01775 at 361.569 kb on + strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.612 kb on - strand, within AZOBR_RS01775 at 361.957 kb on + strand, within AZOBR_RS01780 at 361.957 kb on + strand, within AZOBR_RS01780 at 361.958 kb on - strand, within AZOBR_RS01780 at 362.016 kb on + strand, within AZOBR_RS01780 at 362.016 kb on + strand, within AZOBR_RS01780 at 362.017 kb on - strand, within AZOBR_RS01780 at 362.017 kb on - strand, within AZOBR_RS01780 at 362.043 kb on + strand, within AZOBR_RS01780 at 362.043 kb on + strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.044 kb on - strand, within AZOBR_RS01780 at 362.119 kb on + strand, within AZOBR_RS01780 at 362.119 kb on + strand at 362.181 kb on + strand, within AZOBR_RS01780 at 362.182 kb on - strand, within AZOBR_RS01780 at 362.182 kb on - strand, within AZOBR_RS01780 at 362.247 kb on + strand, within AZOBR_RS01780 at 362.248 kb on - strand, within AZOBR_RS01780 at 362.415 kb on + strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.416 kb on - strand, within AZOBR_RS01780 at 362.538 kb on + strand, within AZOBR_RS01780 at 362.559 kb on + strand, within AZOBR_RS01780 at 362.560 kb on - strand, within AZOBR_RS01780 at 362.664 kb on + strand, within AZOBR_RS01780 at 362.664 kb on + strand, within AZOBR_RS01780 at 362.665 kb on - strand, within AZOBR_RS01780 at 362.665 kb on - strand, within AZOBR_RS01780 at 362.682 kb on + strand, within AZOBR_RS01780 at 362.682 kb on + strand, within AZOBR_RS01780 at 362.682 kb on + strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.683 kb on - strand, within AZOBR_RS01780 at 362.694 kb on + strand, within AZOBR_RS01780 at 362.694 kb on + strand, within AZOBR_RS01780 at 362.694 kb on + strand, within AZOBR_RS01780 at 362.694 kb on + strand, within AZOBR_RS01780 at 362.694 kb on + strand, within AZOBR_RS01780 at 362.695 kb on - strand, within AZOBR_RS01780 at 362.695 kb on - strand, within AZOBR_RS01780 at 362.695 kb on - strand, within AZOBR_RS01780 at 362.695 kb on - strand, within AZOBR_RS01780 at 362.790 kb on + strand at 362.790 kb on + strand at 362.791 kb on - strand at 362.843 kb on + strand at 363.190 kb on - strand, within AZOBR_RS01785 at 363.442 kb on + strand at 363.442 kb on + strand at 363.442 kb on + strand at 363.443 kb on - strand at 363.443 kb on - strand at 363.443 kb on - strand at 363.649 kb on + strand, within AZOBR_RS01790 at 363.650 kb on - strand, within AZOBR_RS01790
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 361,103 + -2.7 361,103 + +0.8 361,248 + AZOBR_RS01775 0.18 -1.6 361,249 - AZOBR_RS01775 0.18 -2.7 361,569 + AZOBR_RS01775 0.65 -2.2 361,612 - AZOBR_RS01775 0.72 -1.1 361,612 - AZOBR_RS01775 0.72 -0.8 361,612 - AZOBR_RS01775 0.72 -2.6 361,612 - AZOBR_RS01775 0.72 -3.8 361,957 + AZOBR_RS01780 0.12 +0.0 361,957 + AZOBR_RS01780 0.12 -0.9 361,958 - AZOBR_RS01780 0.12 +0.3 362,016 + AZOBR_RS01780 0.18 +0.3 362,016 + AZOBR_RS01780 0.18 +1.7 362,017 - AZOBR_RS01780 0.18 -1.1 362,017 - AZOBR_RS01780 0.18 -0.5 362,043 + AZOBR_RS01780 0.20 -3.1 362,043 + AZOBR_RS01780 0.20 +0.3 362,044 - AZOBR_RS01780 0.21 -1.3 362,044 - AZOBR_RS01780 0.21 -0.8 362,044 - AZOBR_RS01780 0.21 +0.5 362,044 - AZOBR_RS01780 0.21 -0.4 362,119 + AZOBR_RS01780 0.28 +0.6 362,119 + -1.6 362,181 + AZOBR_RS01780 0.35 -2.3 362,182 - AZOBR_RS01780 0.35 +0.7 362,182 - AZOBR_RS01780 0.35 -3.4 362,247 + AZOBR_RS01780 0.41 -1.7 362,248 - AZOBR_RS01780 0.41 +1.6 362,415 + AZOBR_RS01780 0.59 -0.9 362,416 - AZOBR_RS01780 0.59 +1.3 362,416 - AZOBR_RS01780 0.59 +1.3 362,416 - AZOBR_RS01780 0.59 -0.4 362,416 - AZOBR_RS01780 0.59 +0.3 362,416 - AZOBR_RS01780 0.59 +0.5 362,416 - AZOBR_RS01780 0.59 +0.5 362,538 + AZOBR_RS01780 0.71 +0.1 362,559 + AZOBR_RS01780 0.73 -4.1 362,560 - AZOBR_RS01780 0.73 -0.2 362,664 + AZOBR_RS01780 0.84 -0.6 362,664 + AZOBR_RS01780 0.84 -0.5 362,665 - AZOBR_RS01780 0.84 +0.1 362,665 - AZOBR_RS01780 0.84 +1.4 362,682 + AZOBR_RS01780 0.86 -1.7 362,682 + AZOBR_RS01780 0.86 -3.0 362,682 + AZOBR_RS01780 0.86 -2.3 362,683 - AZOBR_RS01780 0.86 +0.9 362,683 - AZOBR_RS01780 0.86 -4.0 362,683 - AZOBR_RS01780 0.86 +0.5 362,683 - AZOBR_RS01780 0.86 +1.1 362,683 - AZOBR_RS01780 0.86 +1.1 362,683 - AZOBR_RS01780 0.86 -0.8 362,694 + AZOBR_RS01780 0.87 -3.0 362,694 + AZOBR_RS01780 0.87 +0.4 362,694 + AZOBR_RS01780 0.87 -4.0 362,694 + AZOBR_RS01780 0.87 -0.8 362,694 + AZOBR_RS01780 0.87 -3.4 362,695 - AZOBR_RS01780 0.87 -2.4 362,695 - AZOBR_RS01780 0.87 +0.0 362,695 - AZOBR_RS01780 0.87 +0.4 362,695 - AZOBR_RS01780 0.87 -1.3 362,790 + -0.4 362,790 + +0.8 362,791 - +0.6 362,843 + -1.9 363,190 - AZOBR_RS01785 0.72 +0.4 363,442 + +0.3 363,442 + +0.4 363,442 + -0.2 363,443 - +0.7 363,443 - -1.6 363,443 - +0.2 363,649 + AZOBR_RS01790 0.14 -0.1 363,650 - AZOBR_RS01790 0.14 +0.1
Or see this region's nucleotide sequence