Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01755 and AZOBR_RS01760 overlap by 4 nucleotides AZOBR_RS01760 and AZOBR_RS01765 overlap by 4 nucleotides AZOBR_RS01765 and AZOBR_RS01770 are separated by 9 nucleotides AZOBR_RS01770 and AZOBR_RS01775 overlap by 8 nucleotides
AZOBR_RS01755: AZOBR_RS01755 - hypothetical protein, at 358,189 to 359,037
_RS01755
AZOBR_RS01760: AZOBR_RS01760 - septum formation protein Maf, at 359,034 to 359,642
_RS01760
AZOBR_RS01765: AZOBR_RS01765 - shikimate 5-dehydrogenase, at 359,639 to 360,478
_RS01765
AZOBR_RS01770: AZOBR_RS01770 - dephospho-CoA kinase, at 360,488 to 361,132
_RS01770
AZOBR_RS01775: AZOBR_RS01775 - DNA polymerase III subunit epsilon, at 361,125 to 361,802
_RS01775
Position (kb) 359
360
361 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.849 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.517 kb on + strand, within AZOBR_RS01760 at 359.517 kb on + strand, within AZOBR_RS01760 at 361.103 kb on + strand at 361.103 kb on + strand at 361.248 kb on + strand, within AZOBR_RS01775 at 361.249 kb on - strand, within AZOBR_RS01775
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 358,669 + AZOBR_RS01755 0.57 -2.6 358,669 + AZOBR_RS01755 0.57 -0.8 358,669 + AZOBR_RS01755 0.57 -0.4 358,669 + AZOBR_RS01755 0.57 +0.2 358,669 + AZOBR_RS01755 0.57 -1.0 358,849 + AZOBR_RS01755 0.78 +1.2 358,896 + AZOBR_RS01755 0.83 +0.5 358,896 + AZOBR_RS01755 0.83 -0.1 358,896 + AZOBR_RS01755 0.83 +0.7 359,472 + AZOBR_RS01760 0.72 -4.5 359,472 + AZOBR_RS01760 0.72 +0.9 359,472 + AZOBR_RS01760 0.72 -0.0 359,517 + AZOBR_RS01760 0.79 -0.2 359,517 + AZOBR_RS01760 0.79 -2.2 361,103 + -2.7 361,103 + +0.8 361,248 + AZOBR_RS01775 0.18 -1.6 361,249 - AZOBR_RS01775 0.18 -2.7
Or see this region's nucleotide sequence