Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01725

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01715 and AZOBR_RS01720 are separated by 217 nucleotidesAZOBR_RS01720 and AZOBR_RS01725 are separated by 140 nucleotides AZOBR_RS01715: AZOBR_RS01715 - exlusion protein FxsA, at 349,741 to 350,241 _RS01715 AZOBR_RS01720: AZOBR_RS01720 - preprotein translocase subunit SecB, at 350,459 to 350,956 _RS01720 AZOBR_RS01725: AZOBR_RS01725 - transcription termination factor Rho, at 351,097 to 352,353 _RS01725 Position (kb) 351 352 353Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 350.222 kb on - strandat 350.399 kb on + strandat 350.400 kb on - strandat 350.531 kb on + strand, within AZOBR_RS01720at 350.531 kb on + strand, within AZOBR_RS01720at 350.532 kb on - strand, within AZOBR_RS01720at 350.651 kb on + strand, within AZOBR_RS01720at 350.651 kb on + strand, within AZOBR_RS01720at 350.652 kb on - strand, within AZOBR_RS01720at 350.724 kb on - strand, within AZOBR_RS01720at 351.099 kb on - strandat 352.655 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.958 kb on - strandat 352.958 kb on - strandat 353.058 kb on - strandat 353.254 kb on + strandat 353.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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350,222 - -0.4
350,399 + +1.6
350,400 - +0.1
350,531 + AZOBR_RS01720 0.14 +2.1
350,531 + AZOBR_RS01720 0.14 +2.7
350,532 - AZOBR_RS01720 0.15 -0.3
350,651 + AZOBR_RS01720 0.39 -1.4
350,651 + AZOBR_RS01720 0.39 +2.1
350,652 - AZOBR_RS01720 0.39 +1.7
350,724 - AZOBR_RS01720 0.53 +0.6
351,099 - +0.8
352,655 + -0.4
352,957 + -0.4
352,957 + +0.4
352,957 + -4.6
352,957 + -0.2
352,957 + +0.3
352,958 - +1.1
352,958 - +0.5
353,058 - +0.6
353,254 + -1.8
353,255 - +1.0

Or see this region's nucleotide sequence