Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01575 and AZOBR_RS01580 are separated by 19 nucleotides AZOBR_RS01580 and AZOBR_RS01585 are separated by 71 nucleotides
AZOBR_RS01575: AZOBR_RS01575 - 6-O-methylguanine DNA methyltransferase, at 323,345 to 324,169
_RS01575
AZOBR_RS01580: AZOBR_RS01580 - dihydrodipicolinate reductase, at 324,189 to 324,986
_RS01580
AZOBR_RS01585: AZOBR_RS01585 - zinc transporter, at 325,058 to 326,044
_RS01585
Position (kb) 324
325 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 323.609 kb on + strand, within AZOBR_RS01575 at 323.610 kb on - strand, within AZOBR_RS01575 at 323.610 kb on - strand, within AZOBR_RS01575 at 323.610 kb on - strand, within AZOBR_RS01575 at 324.086 kb on + strand, within AZOBR_RS01575 at 324.086 kb on + strand, within AZOBR_RS01575 at 324.167 kb on + strand at 325.339 kb on - strand, within AZOBR_RS01585 at 325.353 kb on + strand, within AZOBR_RS01585 at 325.359 kb on + strand, within AZOBR_RS01585 at 325.360 kb on - strand, within AZOBR_RS01585 at 325.470 kb on + strand, within AZOBR_RS01585 at 325.618 kb on + strand, within AZOBR_RS01585 at 325.618 kb on + strand, within AZOBR_RS01585 at 325.619 kb on - strand, within AZOBR_RS01585 at 325.619 kb on - strand, within AZOBR_RS01585 at 325.619 kb on - strand, within AZOBR_RS01585 at 325.845 kb on + strand, within AZOBR_RS01585 at 325.845 kb on + strand, within AZOBR_RS01585 at 325.845 kb on + strand, within AZOBR_RS01585 at 325.845 kb on + strand, within AZOBR_RS01585 at 325.845 kb on + strand, within AZOBR_RS01585 at 325.846 kb on - strand, within AZOBR_RS01585 at 325.846 kb on - strand, within AZOBR_RS01585
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 323,609 + AZOBR_RS01575 0.32 -1.6 323,610 - AZOBR_RS01575 0.32 -0.0 323,610 - AZOBR_RS01575 0.32 +1.1 323,610 - AZOBR_RS01575 0.32 -0.2 324,086 + AZOBR_RS01575 0.90 -0.0 324,086 + AZOBR_RS01575 0.90 -0.0 324,167 + -3.3 325,339 - AZOBR_RS01585 0.28 -0.7 325,353 + AZOBR_RS01585 0.30 +0.4 325,359 + AZOBR_RS01585 0.30 -2.2 325,360 - AZOBR_RS01585 0.31 +1.8 325,470 + AZOBR_RS01585 0.42 -0.6 325,618 + AZOBR_RS01585 0.57 -2.1 325,618 + AZOBR_RS01585 0.57 -3.1 325,619 - AZOBR_RS01585 0.57 -0.9 325,619 - AZOBR_RS01585 0.57 -0.4 325,619 - AZOBR_RS01585 0.57 -0.8 325,845 + AZOBR_RS01585 0.80 -0.5 325,845 + AZOBR_RS01585 0.80 -0.9 325,845 + AZOBR_RS01585 0.80 +1.0 325,845 + AZOBR_RS01585 0.80 -3.7 325,845 + AZOBR_RS01585 0.80 -2.4 325,846 - AZOBR_RS01585 0.80 -5.1 325,846 - AZOBR_RS01585 0.80 -0.9
Or see this region's nucleotide sequence