Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01325 and AZOBR_RS01330 are separated by 230 nucleotides AZOBR_RS01330 and AZOBR_RS01335 are separated by 84 nucleotides AZOBR_RS01335 and AZOBR_RS01340 overlap by 4 nucleotides
AZOBR_RS01325: AZOBR_RS01325 - 2-hydroxyacid dehydrogenase, at 276,474 to 277,463
_RS01325
AZOBR_RS01330: AZOBR_RS01330 - hypothetical protein, at 277,694 to 278,248
_RS01330
AZOBR_RS01335: AZOBR_RS01335 - hypothetical protein, at 278,333 to 278,926
_RS01335
AZOBR_RS01340: AZOBR_RS01340 - rubrerythrin, at 278,923 to 279,342
_RS01340
Position (kb) 277
278
279 Strain fitness (log2 ratio) -2
-1
0
1 at 276.799 kb on + strand, within AZOBR_RS01325 at 276.799 kb on + strand, within AZOBR_RS01325 at 276.874 kb on + strand, within AZOBR_RS01325 at 276.874 kb on + strand, within AZOBR_RS01325 at 276.928 kb on + strand, within AZOBR_RS01325 at 277.463 kb on + strand at 277.463 kb on + strand at 277.643 kb on + strand at 277.643 kb on + strand at 277.645 kb on + strand at 277.645 kb on + strand at 278.225 kb on + strand at 278.225 kb on + strand at 278.395 kb on - strand, within AZOBR_RS01335 at 278.688 kb on + strand, within AZOBR_RS01335 at 278.688 kb on + strand, within AZOBR_RS01335 at 278.772 kb on + strand, within AZOBR_RS01335 at 278.871 kb on + strand at 279.053 kb on + strand, within AZOBR_RS01340 at 279.065 kb on + strand, within AZOBR_RS01340 at 279.065 kb on + strand, within AZOBR_RS01340 at 279.065 kb on + strand, within AZOBR_RS01340
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 276,799 + AZOBR_RS01325 0.33 +0.3 276,799 + AZOBR_RS01325 0.33 +0.5 276,874 + AZOBR_RS01325 0.40 +0.0 276,874 + AZOBR_RS01325 0.40 -1.9 276,928 + AZOBR_RS01325 0.46 +0.8 277,463 + -1.5 277,463 + -0.5 277,643 + -1.2 277,643 + +0.4 277,645 + +0.7 277,645 + +0.8 278,225 + +0.6 278,225 + -0.1 278,395 - AZOBR_RS01335 0.10 +0.3 278,688 + AZOBR_RS01335 0.60 +0.7 278,688 + AZOBR_RS01335 0.60 +1.3 278,772 + AZOBR_RS01335 0.74 -0.0 278,871 + -1.4 279,053 + AZOBR_RS01340 0.31 +0.6 279,065 + AZOBR_RS01340 0.34 -0.8 279,065 + AZOBR_RS01340 0.34 +0.7 279,065 + AZOBR_RS01340 0.34 +0.8
Or see this region's nucleotide sequence