Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01290 and AZOBR_RS01295 are separated by 121 nucleotides AZOBR_RS01295 and AZOBR_RS01300 overlap by 46 nucleotides AZOBR_RS01300 and AZOBR_RS01305 are separated by 148 nucleotides AZOBR_RS01305 and AZOBR_RS01310 are separated by 93 nucleotides
AZOBR_RS01290: AZOBR_RS01290 - 2-octaprenylphenol hydroxylase, at 266,941 to 268,479
_RS01290
AZOBR_RS01295: AZOBR_RS01295 - hypothetical protein, at 268,601 to 269,332
_RS01295
AZOBR_RS01300: AZOBR_RS01300 - peptide ABC transporter substrate-binding protein, at 269,287 to 271,095
_RS01300
AZOBR_RS01305: AZOBR_RS01305 - inorganic pyrophosphatase, at 271,244 to 271,801
_RS01305
AZOBR_RS01310: AZOBR_RS01310 - lactate dehydrogenase, at 271,895 to 272,836
_RS01310
Position (kb) 269
270
271
272 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 268.477 kb on + strand at 268.478 kb on - strand at 268.478 kb on - strand at 268.478 kb on - strand at 268.478 kb on - strand at 268.634 kb on + strand at 268.634 kb on + strand at 268.635 kb on - strand at 268.635 kb on - strand at 268.635 kb on - strand at 268.886 kb on + strand, within AZOBR_RS01295 at 268.886 kb on + strand, within AZOBR_RS01295 at 268.925 kb on + strand, within AZOBR_RS01295 at 268.926 kb on - strand, within AZOBR_RS01295 at 269.189 kb on + strand, within AZOBR_RS01295 at 269.190 kb on - strand, within AZOBR_RS01295 at 269.330 kb on + strand at 269.411 kb on + strand at 269.411 kb on + strand at 269.411 kb on + strand at 269.411 kb on + strand at 269.411 kb on + strand at 269.411 kb on + strand at 269.412 kb on - strand at 269.412 kb on - strand at 269.412 kb on - strand at 269.412 kb on - strand at 269.412 kb on - strand at 269.412 kb on - strand at 269.412 kb on - strand at 269.412 kb on - strand at 269.531 kb on + strand, within AZOBR_RS01300 at 269.573 kb on + strand, within AZOBR_RS01300 at 269.573 kb on + strand, within AZOBR_RS01300 at 269.573 kb on + strand, within AZOBR_RS01300 at 269.573 kb on + strand, within AZOBR_RS01300 at 269.574 kb on - strand, within AZOBR_RS01300 at 269.574 kb on - strand, within AZOBR_RS01300 at 269.574 kb on - strand, within AZOBR_RS01300 at 269.576 kb on + strand, within AZOBR_RS01300 at 269.576 kb on + strand, within AZOBR_RS01300 at 269.577 kb on - strand, within AZOBR_RS01300 at 269.577 kb on - strand, within AZOBR_RS01300 at 269.863 kb on - strand, within AZOBR_RS01300 at 270.014 kb on + strand, within AZOBR_RS01300 at 270.014 kb on + strand, within AZOBR_RS01300 at 270.017 kb on + strand, within AZOBR_RS01300 at 270.017 kb on + strand, within AZOBR_RS01300 at 270.017 kb on + strand, within AZOBR_RS01300 at 270.017 kb on + strand, within AZOBR_RS01300 at 270.018 kb on - strand, within AZOBR_RS01300 at 270.018 kb on - strand, within AZOBR_RS01300 at 270.314 kb on + strand, within AZOBR_RS01300 at 270.314 kb on + strand, within AZOBR_RS01300 at 270.315 kb on - strand, within AZOBR_RS01300 at 270.377 kb on + strand, within AZOBR_RS01300 at 270.378 kb on - strand, within AZOBR_RS01300 at 270.626 kb on + strand, within AZOBR_RS01300 at 270.626 kb on + strand, within AZOBR_RS01300 at 270.626 kb on + strand, within AZOBR_RS01300 at 270.795 kb on - strand, within AZOBR_RS01300 at 270.983 kb on + strand at 271.142 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 268,477 + -2.9 268,478 - -0.9 268,478 - -0.5 268,478 - +0.4 268,478 - +0.3 268,634 + +0.9 268,634 + +0.8 268,635 - -1.1 268,635 - +0.2 268,635 - +0.7 268,886 + AZOBR_RS01295 0.39 -1.0 268,886 + AZOBR_RS01295 0.39 -0.5 268,925 + AZOBR_RS01295 0.44 +0.4 268,926 - AZOBR_RS01295 0.44 -0.5 269,189 + AZOBR_RS01295 0.80 -1.4 269,190 - AZOBR_RS01295 0.80 +0.7 269,330 + +0.5 269,411 + -2.1 269,411 + -2.5 269,411 + -3.1 269,411 + +1.4 269,411 + +1.8 269,411 + -2.1 269,412 - +2.4 269,412 - +1.2 269,412 - +1.2 269,412 - -3.4 269,412 - -0.4 269,412 - -3.1 269,412 - -1.1 269,412 - -1.3 269,531 + AZOBR_RS01300 0.13 -1.1 269,573 + AZOBR_RS01300 0.16 +0.5 269,573 + AZOBR_RS01300 0.16 +2.0 269,573 + AZOBR_RS01300 0.16 -2.6 269,573 + AZOBR_RS01300 0.16 +0.9 269,574 - AZOBR_RS01300 0.16 +0.0 269,574 - AZOBR_RS01300 0.16 -2.9 269,574 - AZOBR_RS01300 0.16 +0.5 269,576 + AZOBR_RS01300 0.16 +0.3 269,576 + AZOBR_RS01300 0.16 -0.5 269,577 - AZOBR_RS01300 0.16 -0.1 269,577 - AZOBR_RS01300 0.16 +0.1 269,863 - AZOBR_RS01300 0.32 +0.1 270,014 + AZOBR_RS01300 0.40 -1.7 270,014 + AZOBR_RS01300 0.40 -0.2 270,017 + AZOBR_RS01300 0.40 -3.3 270,017 + AZOBR_RS01300 0.40 +1.6 270,017 + AZOBR_RS01300 0.40 -0.5 270,017 + AZOBR_RS01300 0.40 +0.4 270,018 - AZOBR_RS01300 0.40 +0.3 270,018 - AZOBR_RS01300 0.40 -1.1 270,314 + AZOBR_RS01300 0.57 -0.0 270,314 + AZOBR_RS01300 0.57 +0.5 270,315 - AZOBR_RS01300 0.57 -1.9 270,377 + AZOBR_RS01300 0.60 -0.1 270,378 - AZOBR_RS01300 0.60 +0.2 270,626 + AZOBR_RS01300 0.74 -1.7 270,626 + AZOBR_RS01300 0.74 +1.8 270,626 + AZOBR_RS01300 0.74 -5.5 270,795 - AZOBR_RS01300 0.83 +0.8 270,983 + +1.1 271,142 + -0.8
Or see this region's nucleotide sequence