Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01195

Experiment: Sisomicin 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS01190 and AZOBR_RS01195 are separated by 75 nucleotidesAZOBR_RS01195 and AZOBR_RS01200 are separated by 71 nucleotides AZOBR_RS01190: AZOBR_RS01190 - SAM-dependent methyltransferase, at 244,766 to 245,974 _RS01190 AZOBR_RS01195: AZOBR_RS01195 - RNA methyltransferase, at 246,050 to 247,315 _RS01195 AZOBR_RS01200: AZOBR_RS01200 - copper oxidase, at 247,387 to 248,715 _RS01200 Position (kb) 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 245.090 kb on + strand, within AZOBR_RS01190at 245.091 kb on - strand, within AZOBR_RS01190at 245.402 kb on + strand, within AZOBR_RS01190at 245.403 kb on - strand, within AZOBR_RS01190at 245.403 kb on - strand, within AZOBR_RS01190at 245.474 kb on + strand, within AZOBR_RS01190at 245.474 kb on + strand, within AZOBR_RS01190at 245.474 kb on + strand, within AZOBR_RS01190at 245.475 kb on - strand, within AZOBR_RS01190at 245.475 kb on - strand, within AZOBR_RS01190at 245.942 kb on + strandat 245.943 kb on - strandat 245.947 kb on + strandat 246.051 kb on + strandat 246.133 kb on - strandat 246.133 kb on - strandat 247.063 kb on - strand, within AZOBR_RS01195at 247.078 kb on + strand, within AZOBR_RS01195at 247.892 kb on + strand, within AZOBR_RS01200at 247.892 kb on + strand, within AZOBR_RS01200at 247.928 kb on + strand, within AZOBR_RS01200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
remove
245,090 + AZOBR_RS01190 0.27 +1.2
245,091 - AZOBR_RS01190 0.27 -1.7
245,402 + AZOBR_RS01190 0.53 -0.3
245,403 - AZOBR_RS01190 0.53 -0.1
245,403 - AZOBR_RS01190 0.53 -0.4
245,474 + AZOBR_RS01190 0.59 +0.0
245,474 + AZOBR_RS01190 0.59 +0.1
245,474 + AZOBR_RS01190 0.59 -0.2
245,475 - AZOBR_RS01190 0.59 +0.4
245,475 - AZOBR_RS01190 0.59 -0.8
245,942 + -3.1
245,943 - +0.7
245,947 + -0.5
246,051 + +1.1
246,133 - -3.1
246,133 - -0.3
247,063 - AZOBR_RS01195 0.80 -0.6
247,078 + AZOBR_RS01195 0.81 -3.4
247,892 + AZOBR_RS01200 0.38 +0.6
247,892 + AZOBR_RS01200 0.38 -0.8
247,928 + AZOBR_RS01200 0.41 +3.2

Or see this region's nucleotide sequence