Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01065

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01060 and AZOBR_RS01065 are separated by 281 nucleotidesAZOBR_RS01065 and AZOBR_RS01070 overlap by 4 nucleotidesAZOBR_RS01070 and AZOBR_RS01075 overlap by 1 nucleotides AZOBR_RS01060: AZOBR_RS01060 - ATPase AAA, at 215,782 to 217,218 _RS01060 AZOBR_RS01065: AZOBR_RS01065 - phosphopantothenate synthase, at 217,500 to 218,756 _RS01065 AZOBR_RS01070: AZOBR_RS01070 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 218,753 to 219,247 _RS01070 AZOBR_RS01075: AZOBR_RS01075 - Rrf2 family transcriptional regulator, at 219,247 to 219,702 _RS01075 Position (kb) 217 218 219Strain fitness (log2 ratio) -2 -1 0 1at 216.753 kb on - strand, within AZOBR_RS01060at 216.795 kb on - strand, within AZOBR_RS01060at 216.917 kb on + strand, within AZOBR_RS01060at 217.157 kb on + strandat 217.157 kb on + strandat 217.274 kb on + strandat 217.301 kb on + strandat 217.301 kb on + strandat 217.302 kb on - strandat 219.693 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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216,753 - AZOBR_RS01060 0.68 -2.4
216,795 - AZOBR_RS01060 0.70 +0.1
216,917 + AZOBR_RS01060 0.79 -1.7
217,157 + +0.4
217,157 + -0.6
217,274 + +1.3
217,301 + +1.0
217,301 + -1.7
217,302 - -0.1
219,693 + -2.0

Or see this region's nucleotide sequence