Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00565 and AZOBR_RS00570 are separated by 223 nucleotides AZOBR_RS00570 and AZOBR_RS00575 are separated by 61 nucleotides AZOBR_RS00575 and AZOBR_RS00580 overlap by 4 nucleotides
AZOBR_RS00565: AZOBR_RS00565 - ferredoxin--NADP reductase, at 113,059 to 114,081
_RS00565
AZOBR_RS00570: AZOBR_RS00570 - hypothetical protein, at 114,305 to 114,736
_RS00570
AZOBR_RS00575: AZOBR_RS00575 - ATPase, at 114,798 to 115,256
_RS00575
AZOBR_RS00580: AZOBR_RS00580 - aminoglycoside phosphotransferase, at 115,253 to 116,266
_RS00580
Position (kb) 114
115 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 114.419 kb on + strand, within AZOBR_RS00570 at 114.539 kb on + strand, within AZOBR_RS00570 at 114.539 kb on + strand, within AZOBR_RS00570 at 115.302 kb on + strand at 115.353 kb on - strand at 115.583 kb on + strand, within AZOBR_RS00580 at 115.712 kb on + strand, within AZOBR_RS00580 at 115.712 kb on + strand, within AZOBR_RS00580 at 115.712 kb on + strand, within AZOBR_RS00580 at 115.712 kb on + strand, within AZOBR_RS00580 at 115.712 kb on + strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand, within AZOBR_RS00580 at 115.713 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 114,419 + AZOBR_RS00570 0.26 -0.8 114,539 + AZOBR_RS00570 0.54 +0.1 114,539 + AZOBR_RS00570 0.54 -3.8 115,302 + -1.3 115,353 - -0.1 115,583 + AZOBR_RS00580 0.33 +1.4 115,712 + AZOBR_RS00580 0.45 +0.2 115,712 + AZOBR_RS00580 0.45 +0.3 115,712 + AZOBR_RS00580 0.45 -2.4 115,712 + AZOBR_RS00580 0.45 -3.6 115,712 + AZOBR_RS00580 0.45 +0.0 115,713 - AZOBR_RS00580 0.45 -0.1 115,713 - AZOBR_RS00580 0.45 +0.9 115,713 - AZOBR_RS00580 0.45 -0.1 115,713 - AZOBR_RS00580 0.45 +0.7 115,713 - AZOBR_RS00580 0.45 +0.3 115,713 - AZOBR_RS00580 0.45 -1.4 115,713 - +1.1
Or see this region's nucleotide sequence