Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00565

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00555 and AZOBR_RS00560 are separated by 186 nucleotidesAZOBR_RS00560 and AZOBR_RS00565 are separated by 244 nucleotidesAZOBR_RS00565 and AZOBR_RS00570 are separated by 223 nucleotidesAZOBR_RS00570 and AZOBR_RS00575 are separated by 61 nucleotides AZOBR_RS00555: AZOBR_RS00555 - chemotaxis protein CheY, at 111,348 to 112,073 _RS00555 AZOBR_RS00560: AZOBR_RS00560 - hypothetical protein, at 112,260 to 112,814 _RS00560 AZOBR_RS00565: AZOBR_RS00565 - ferredoxin--NADP reductase, at 113,059 to 114,081 _RS00565 AZOBR_RS00570: AZOBR_RS00570 - hypothetical protein, at 114,305 to 114,736 _RS00570 AZOBR_RS00575: AZOBR_RS00575 - ATPase, at 114,798 to 115,256 _RS00575 Position (kb) 113 114 115Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 112.194 kb on - strandat 112.271 kb on + strandat 112.545 kb on + strand, within AZOBR_RS00560at 112.545 kb on + strand, within AZOBR_RS00560at 112.546 kb on - strand, within AZOBR_RS00560at 113.061 kb on - strandat 114.419 kb on + strand, within AZOBR_RS00570at 114.539 kb on + strand, within AZOBR_RS00570at 114.539 kb on + strand, within AZOBR_RS00570

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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112,194 - +0.7
112,271 + -2.1
112,545 + AZOBR_RS00560 0.51 -0.2
112,545 + AZOBR_RS00560 0.51 -0.1
112,546 - AZOBR_RS00560 0.52 +0.3
113,061 - -0.2
114,419 + AZOBR_RS00570 0.26 -0.8
114,539 + AZOBR_RS00570 0.54 +0.1
114,539 + AZOBR_RS00570 0.54 -3.8

Or see this region's nucleotide sequence