Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00075 and AZOBR_RS00080 are separated by 314 nucleotides AZOBR_RS00080 and AZOBR_RS00085 are separated by 290 nucleotides
AZOBR_RS00075: AZOBR_RS00075 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 3,825 to 5,162
_RS00075
AZOBR_RS00080: AZOBR_RS00080 - hypothetical protein, at 5,477 to 5,824
_RS00080
AZOBR_RS00085: AZOBR_RS00085 - histidine kinase, at 6,115 to 7,206
_RS00085
Position (kb) 5
6 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4.700 kb on - strand, within AZOBR_RS00075 at 4.762 kb on + strand, within AZOBR_RS00075 at 4.763 kb on - strand, within AZOBR_RS00075 at 4.765 kb on + strand, within AZOBR_RS00075 at 4.766 kb on - strand, within AZOBR_RS00075 at 4.786 kb on + strand, within AZOBR_RS00075 at 4.786 kb on + strand, within AZOBR_RS00075 at 4.787 kb on - strand, within AZOBR_RS00075 at 4.787 kb on - strand, within AZOBR_RS00075 at 4.954 kb on + strand, within AZOBR_RS00075 at 4.954 kb on + strand, within AZOBR_RS00075 at 5.089 kb on + strand at 5.090 kb on - strand at 5.194 kb on + strand at 5.195 kb on - strand at 5.323 kb on + strand at 5.342 kb on + strand at 5.342 kb on + strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.464 kb on + strand at 5.595 kb on + strand, within AZOBR_RS00080 at 5.595 kb on + strand, within AZOBR_RS00080 at 5.595 kb on + strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.620 kb on - strand, within AZOBR_RS00080 at 5.658 kb on + strand, within AZOBR_RS00080 at 5.658 kb on + strand, within AZOBR_RS00080 at 5.659 kb on - strand, within AZOBR_RS00080 at 5.706 kb on + strand, within AZOBR_RS00080 at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.963 kb on - strand at 5.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 4,700 - AZOBR_RS00075 0.65 -0.1 4,762 + AZOBR_RS00075 0.70 -4.3 4,763 - AZOBR_RS00075 0.70 -0.3 4,765 + AZOBR_RS00075 0.70 +0.3 4,766 - AZOBR_RS00075 0.70 +1.0 4,786 + AZOBR_RS00075 0.72 -0.1 4,786 + AZOBR_RS00075 0.72 +1.0 4,787 - AZOBR_RS00075 0.72 +0.2 4,787 - AZOBR_RS00075 0.72 -0.1 4,954 + AZOBR_RS00075 0.84 +0.3 4,954 + AZOBR_RS00075 0.84 -0.1 5,089 + -0.2 5,090 - +0.4 5,194 + -0.6 5,195 - -0.6 5,323 + -2.0 5,342 + -0.1 5,342 + -0.0 5,343 - -0.4 5,343 - +0.2 5,343 - +0.6 5,343 - +0.5 5,464 + +0.2 5,595 + AZOBR_RS00080 0.34 -2.7 5,595 + AZOBR_RS00080 0.34 +0.3 5,595 + AZOBR_RS00080 0.34 +1.4 5,596 - AZOBR_RS00080 0.34 +0.6 5,596 - AZOBR_RS00080 0.34 -2.3 5,596 - AZOBR_RS00080 0.34 -0.5 5,596 - AZOBR_RS00080 0.34 +1.0 5,620 - AZOBR_RS00080 0.41 -1.4 5,658 + AZOBR_RS00080 0.52 -2.2 5,658 + AZOBR_RS00080 0.52 -0.5 5,659 - AZOBR_RS00080 0.52 +1.1 5,706 + AZOBR_RS00080 0.66 -3.0 5,962 + +1.3 5,962 + +0.4 5,962 + -3.0 5,962 + +1.0 5,962 + +0.3 5,962 + -2.9 5,962 + +0.5 5,962 + +0.5 5,962 + -0.8 5,963 - -3.7 5,963 - +0.4
Or see this region's nucleotide sequence