Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_30170

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_30165 and AO356_30170 are separated by 459 nucleotidesAO356_30170 and AO356_30175 overlap by 4 nucleotides AO356_30165: AO356_30165 - hypothetical protein, at 7,040,608 to 7,041,681 _30165 AO356_30170: AO356_30170 - cytochrome B, at 7,042,141 to 7,042,719 _30170 AO356_30175: AO356_30175 - caspase, at 7,042,716 to 7,043,798 _30175 Position (kb) 7042 7043Strain fitness (log2 ratio) -2 -1 0 1at 7041.218 kb on + strand, within AO356_30165at 7041.381 kb on + strand, within AO356_30165at 7041.381 kb on + strand, within AO356_30165at 7041.422 kb on + strand, within AO356_30165at 7041.423 kb on - strand, within AO356_30165at 7041.579 kb on - strandat 7041.619 kb on + strandat 7041.620 kb on - strandat 7041.620 kb on - strandat 7041.738 kb on + strandat 7041.739 kb on - strandat 7041.779 kb on + strandat 7041.782 kb on - strandat 7041.787 kb on - strandat 7041.821 kb on - strandat 7041.821 kb on - strandat 7041.821 kb on - strandat 7041.821 kb on - strandat 7041.978 kb on + strandat 7041.978 kb on + strandat 7041.979 kb on - strandat 7042.081 kb on - strandat 7042.081 kb on - strandat 7042.081 kb on - strandat 7042.299 kb on + strand, within AO356_30170at 7042.300 kb on - strand, within AO356_30170at 7042.300 kb on - strand, within AO356_30170at 7042.300 kb on - strand, within AO356_30170at 7042.300 kb on - strand, within AO356_30170at 7042.300 kb on - strand, within AO356_30170at 7042.439 kb on + strand, within AO356_30170at 7042.439 kb on + strand, within AO356_30170at 7042.440 kb on - strand, within AO356_30170at 7042.440 kb on - strand, within AO356_30170at 7042.598 kb on + strand, within AO356_30170at 7042.598 kb on + strand, within AO356_30170at 7042.599 kb on - strand, within AO356_30170at 7042.768 kb on + strandat 7042.798 kb on + strandat 7043.127 kb on + strand, within AO356_30175at 7043.142 kb on - strand, within AO356_30175at 7043.515 kb on + strand, within AO356_30175at 7043.516 kb on - strand, within AO356_30175at 7043.516 kb on - strand, within AO356_30175

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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7,041,218 + AO356_30165 0.57 -1.0
7,041,381 + AO356_30165 0.72 -0.8
7,041,381 + AO356_30165 0.72 +0.5
7,041,422 + AO356_30165 0.76 +0.3
7,041,423 - AO356_30165 0.76 +0.7
7,041,579 - +0.3
7,041,619 + +0.0
7,041,620 - +0.6
7,041,620 - +0.6
7,041,738 + -1.0
7,041,739 - +0.7
7,041,779 + -0.3
7,041,782 - -1.2
7,041,787 - +1.1
7,041,821 - -0.3
7,041,821 - -0.0
7,041,821 - -0.8
7,041,821 - -1.5
7,041,978 + -0.9
7,041,978 + +0.4
7,041,979 - +0.7
7,042,081 - -0.6
7,042,081 - -1.1
7,042,081 - -0.7
7,042,299 + AO356_30170 0.27 -0.1
7,042,300 - AO356_30170 0.27 +0.1
7,042,300 - AO356_30170 0.27 -0.1
7,042,300 - AO356_30170 0.27 -0.0
7,042,300 - AO356_30170 0.27 +0.1
7,042,300 - AO356_30170 0.27 +0.9
7,042,439 + AO356_30170 0.51 +0.3
7,042,439 + AO356_30170 0.51 +1.1
7,042,440 - AO356_30170 0.52 +0.2
7,042,440 - AO356_30170 0.52 -0.2
7,042,598 + AO356_30170 0.79 -0.7
7,042,598 + AO356_30170 0.79 +0.1
7,042,599 - AO356_30170 0.79 -0.7
7,042,768 + -0.3
7,042,798 + -0.0
7,043,127 + AO356_30175 0.38 -0.2
7,043,142 - AO356_30175 0.39 +0.8
7,043,515 + AO356_30175 0.74 +0.3
7,043,516 - AO356_30175 0.74 -0.7
7,043,516 - AO356_30175 0.74 -2.5

Or see this region's nucleotide sequence