Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29915

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29910 and AO356_29915 are separated by 280 nucleotidesAO356_29915 and AO356_29920 are separated by 579 nucleotides AO356_29910: AO356_29910 - hypothetical protein, at 6,956,101 to 6,956,556 _29910 AO356_29915: AO356_29915 - hypothetical protein, at 6,956,837 to 6,957,559 _29915 AO356_29920: AO356_29920 - hypothetical protein, at 6,958,139 to 6,967,702 _29920 Position (kb) 6956 6957 6958Strain fitness (log2 ratio) -2 -1 0 1 2at 6955.838 kb on + strandat 6955.927 kb on + strandat 6955.927 kb on + strandat 6955.927 kb on + strandat 6955.927 kb on + strandat 6955.928 kb on - strandat 6955.943 kb on - strandat 6955.943 kb on - strandat 6955.982 kb on + strandat 6955.982 kb on + strandat 6955.983 kb on - strandat 6955.983 kb on - strandat 6955.983 kb on - strandat 6955.983 kb on - strandat 6955.983 kb on - strandat 6955.983 kb on - strandat 6956.102 kb on + strandat 6956.102 kb on + strandat 6956.103 kb on - strandat 6956.107 kb on + strandat 6956.115 kb on - strandat 6956.176 kb on - strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.194 kb on + strand, within AO356_29910at 6956.195 kb on - strand, within AO356_29910at 6956.195 kb on - strand, within AO356_29910at 6956.211 kb on - strand, within AO356_29910at 6956.306 kb on + strand, within AO356_29910at 6956.311 kb on + strand, within AO356_29910at 6956.312 kb on - strand, within AO356_29910at 6956.312 kb on - strand, within AO356_29910at 6956.533 kb on + strandat 6956.534 kb on - strandat 6956.534 kb on - strandat 6956.534 kb on - strandat 6956.608 kb on + strandat 6956.608 kb on + strandat 6956.608 kb on + strandat 6956.608 kb on + strandat 6956.609 kb on - strandat 6956.609 kb on - strandat 6956.609 kb on - strandat 6956.609 kb on - strandat 6956.645 kb on + strandat 6956.645 kb on + strandat 6956.656 kb on + strandat 6956.681 kb on - strandat 6956.714 kb on - strandat 6956.760 kb on - strandat 6956.790 kb on + strandat 6956.859 kb on + strandat 6956.972 kb on + strand, within AO356_29915at 6956.973 kb on - strand, within AO356_29915at 6957.299 kb on + strand, within AO356_29915at 6957.337 kb on + strand, within AO356_29915at 6957.365 kb on + strand, within AO356_29915at 6957.365 kb on + strand, within AO356_29915at 6957.365 kb on + strand, within AO356_29915at 6957.366 kb on - strand, within AO356_29915at 6957.366 kb on - strand, within AO356_29915at 6957.414 kb on + strand, within AO356_29915at 6957.415 kb on - strand, within AO356_29915at 6957.415 kb on - strand, within AO356_29915at 6957.529 kb on - strandat 6957.538 kb on + strandat 6957.561 kb on + strandat 6957.577 kb on + strandat 6957.585 kb on + strandat 6957.585 kb on + strandat 6957.586 kb on - strandat 6957.586 kb on - strandat 6957.619 kb on + strandat 6957.661 kb on + strandat 6957.711 kb on - strandat 6957.749 kb on - strandat 6957.777 kb on + strandat 6957.778 kb on - strandat 6957.778 kb on - strandat 6957.946 kb on + strandat 6957.947 kb on - strandat 6958.224 kb on - strandat 6958.224 kb on - strandat 6958.224 kb on - strandat 6958.237 kb on - strandat 6958.326 kb on + strandat 6958.374 kb on + strandat 6958.375 kb on - strandat 6958.375 kb on - strandat 6958.375 kb on - strandat 6958.375 kb on - strandat 6958.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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6,955,838 + +0.3
6,955,927 + -1.3
6,955,927 + +0.3
6,955,927 + +0.1
6,955,927 + -0.4
6,955,928 - +1.4
6,955,943 - +0.3
6,955,943 - -0.8
6,955,982 + +0.3
6,955,982 + -0.1
6,955,983 - +0.0
6,955,983 - +0.2
6,955,983 - +0.1
6,955,983 - +0.9
6,955,983 - +0.3
6,955,983 - +0.7
6,956,102 + -0.6
6,956,102 + -1.0
6,956,103 - -1.7
6,956,107 + +0.4
6,956,115 - +0.4
6,956,176 - AO356_29910 0.16 +0.8
6,956,194 + AO356_29910 0.20 -0.2
6,956,194 + AO356_29910 0.20 -0.6
6,956,194 + AO356_29910 0.20 -0.3
6,956,194 + AO356_29910 0.20 +0.3
6,956,194 + AO356_29910 0.20 -0.4
6,956,194 + AO356_29910 0.20 +0.0
6,956,195 - AO356_29910 0.21 +0.8
6,956,195 - AO356_29910 0.21 -0.1
6,956,211 - AO356_29910 0.24 +1.1
6,956,306 + AO356_29910 0.45 +0.5
6,956,311 + AO356_29910 0.46 +0.0
6,956,312 - AO356_29910 0.46 -0.0
6,956,312 - AO356_29910 0.46 -0.0
6,956,533 + -0.9
6,956,534 - -0.5
6,956,534 - +0.3
6,956,534 - +0.1
6,956,608 + +0.4
6,956,608 + +0.5
6,956,608 + +1.0
6,956,608 + +1.0
6,956,609 - -0.8
6,956,609 - -0.6
6,956,609 - -1.2
6,956,609 - +0.3
6,956,645 + +0.4
6,956,645 + -1.6
6,956,656 + +1.4
6,956,681 - -0.7
6,956,714 - -1.7
6,956,760 - +0.5
6,956,790 + -0.5
6,956,859 + +0.6
6,956,972 + AO356_29915 0.19 -0.8
6,956,973 - AO356_29915 0.19 -1.0
6,957,299 + AO356_29915 0.64 -0.7
6,957,337 + AO356_29915 0.69 -1.5
6,957,365 + AO356_29915 0.73 +0.0
6,957,365 + AO356_29915 0.73 -0.1
6,957,365 + AO356_29915 0.73 +0.3
6,957,366 - AO356_29915 0.73 -0.1
6,957,366 - AO356_29915 0.73 +1.2
6,957,414 + AO356_29915 0.80 -0.3
6,957,415 - AO356_29915 0.80 +0.4
6,957,415 - AO356_29915 0.80 +0.3
6,957,529 - +1.1
6,957,538 + +0.1
6,957,561 + -0.7
6,957,577 + +0.7
6,957,585 + +0.6
6,957,585 + -0.3
6,957,586 - -2.2
6,957,586 - +0.2
6,957,619 + -1.4
6,957,661 + -0.6
6,957,711 - -0.7
6,957,749 - +0.3
6,957,777 + +0.2
6,957,778 - -0.3
6,957,778 - +2.0
6,957,946 + -1.7
6,957,947 - -0.2
6,958,224 - +0.3
6,958,224 - +1.0
6,958,224 - +1.3
6,958,237 - -0.2
6,958,326 + -0.4
6,958,374 + +0.2
6,958,375 - +0.2
6,958,375 - +0.1
6,958,375 - +0.1
6,958,375 - -0.7
6,958,375 - -0.1

Or see this region's nucleotide sequence