Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29700 and AO356_29705 are separated by 69 nucleotides AO356_29705 and AO356_29710 are separated by 319 nucleotides
AO356_29700: AO356_29700 - 2-methylcitrate dehydratase, at 6,907,964 to 6,909,313
_29700
AO356_29705: AO356_29705 - MFS transporter, at 6,909,383 to 6,910,561
_29705
AO356_29710: AO356_29710 - xylose isomerase, at 6,910,881 to 6,911,732
_29710
Position (kb)
6909
6910
6911 Strain fitness (log2 ratio)
-1
0
1 at 6908.472 kb on + strand, within AO356_29700 at 6908.473 kb on - strand, within AO356_29700 at 6908.772 kb on - strand, within AO356_29700 at 6908.820 kb on + strand, within AO356_29700 at 6908.948 kb on + strand, within AO356_29700 at 6908.948 kb on + strand, within AO356_29700 at 6908.997 kb on - strand, within AO356_29700 at 6909.139 kb on - strand, within AO356_29700 at 6909.139 kb on - strand, within AO356_29700 at 6909.246 kb on + strand at 6909.247 kb on - strand at 6909.289 kb on + strand at 6909.289 kb on + strand at 6909.289 kb on + strand at 6909.289 kb on + strand at 6909.289 kb on + strand at 6909.290 kb on - strand at 6909.290 kb on - strand at 6909.349 kb on - strand at 6909.365 kb on + strand at 6909.365 kb on + strand at 6909.392 kb on + strand at 6909.392 kb on + strand at 6909.520 kb on - strand, within AO356_29705 at 6909.573 kb on - strand, within AO356_29705 at 6909.573 kb on - strand, within AO356_29705 at 6909.792 kb on - strand, within AO356_29705 at 6910.068 kb on - strand, within AO356_29705 at 6910.079 kb on + strand, within AO356_29705 at 6910.080 kb on - strand, within AO356_29705 at 6910.676 kb on - strand at 6910.709 kb on - strand at 6910.737 kb on + strand at 6910.737 kb on + strand at 6910.895 kb on - strand at 6911.046 kb on + strand, within AO356_29710 at 6911.046 kb on + strand, within AO356_29710 at 6911.048 kb on + strand, within AO356_29710 at 6911.070 kb on + strand, within AO356_29710 at 6911.441 kb on + strand, within AO356_29710
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 6,908,472 + AO356_29700 0.38 -0.5 6,908,473 - AO356_29700 0.38 -0.5 6,908,772 - AO356_29700 0.60 +0.3 6,908,820 + AO356_29700 0.63 -0.8 6,908,948 + AO356_29700 0.73 +0.3 6,908,948 + AO356_29700 0.73 -1.0 6,908,997 - AO356_29700 0.77 -0.2 6,909,139 - AO356_29700 0.87 -0.1 6,909,139 - AO356_29700 0.87 +0.5 6,909,246 + +0.3 6,909,247 - -0.5 6,909,289 + -0.1 6,909,289 + -0.4 6,909,289 + +0.1 6,909,289 + +0.8 6,909,289 + -0.1 6,909,290 - +1.2 6,909,290 - +0.6 6,909,349 - -0.8 6,909,365 + -0.2 6,909,365 + +0.8 6,909,392 + -0.2 6,909,392 + +0.3 6,909,520 - AO356_29705 0.12 -0.9 6,909,573 - AO356_29705 0.16 +0.2 6,909,573 - AO356_29705 0.16 -1.2 6,909,792 - AO356_29705 0.35 -0.6 6,910,068 - AO356_29705 0.58 -0.9 6,910,079 + AO356_29705 0.59 +0.2 6,910,080 - AO356_29705 0.59 -0.3 6,910,676 - +0.1 6,910,709 - -0.0 6,910,737 + +1.7 6,910,737 + -0.5 6,910,895 - -0.0 6,911,046 + AO356_29710 0.19 +1.3 6,911,046 + AO356_29710 0.19 -0.4 6,911,048 + AO356_29710 0.20 +0.5 6,911,070 + AO356_29710 0.22 -1.1 6,911,441 + AO356_29710 0.66 -0.4
Or see this region's nucleotide sequence