Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29690 and AO356_29695 overlap by 8 nucleotides AO356_29695 and AO356_29700 overlap by 1 nucleotides AO356_29700 and AO356_29705 are separated by 69 nucleotides
AO356_29690: AO356_29690 - polysaccharide deacetylase, at 6,906,245 to 6,907,087
_29690
AO356_29695: AO356_29695 - polysaccharide deacetylase, at 6,907,080 to 6,907,964
_29695
AO356_29700: AO356_29700 - 2-methylcitrate dehydratase, at 6,907,964 to 6,909,313
_29700
AO356_29705: AO356_29705 - MFS transporter, at 6,909,383 to 6,910,561
_29705
Position (kb)
6907
6908
6909
6910 Strain fitness (log2 ratio)
-1
0
1 at 6906.964 kb on + strand, within AO356_29690 at 6907.126 kb on + strand at 6907.141 kb on - strand at 6907.383 kb on + strand, within AO356_29695 at 6907.618 kb on - strand, within AO356_29695 at 6907.618 kb on - strand, within AO356_29695 at 6907.758 kb on + strand, within AO356_29695 at 6907.936 kb on - strand at 6907.936 kb on - strand at 6908.022 kb on + strand at 6908.023 kb on - strand at 6908.472 kb on + strand, within AO356_29700 at 6908.473 kb on - strand, within AO356_29700 at 6908.772 kb on - strand, within AO356_29700 at 6908.820 kb on + strand, within AO356_29700 at 6908.948 kb on + strand, within AO356_29700 at 6908.948 kb on + strand, within AO356_29700 at 6908.997 kb on - strand, within AO356_29700 at 6909.139 kb on - strand, within AO356_29700 at 6909.139 kb on - strand, within AO356_29700 at 6909.246 kb on + strand at 6909.247 kb on - strand at 6909.289 kb on + strand at 6909.289 kb on + strand at 6909.289 kb on + strand at 6909.289 kb on + strand at 6909.289 kb on + strand at 6909.290 kb on - strand at 6909.290 kb on - strand at 6909.349 kb on - strand at 6909.365 kb on + strand at 6909.365 kb on + strand at 6909.392 kb on + strand at 6909.392 kb on + strand at 6909.520 kb on - strand, within AO356_29705 at 6909.573 kb on - strand, within AO356_29705 at 6909.573 kb on - strand, within AO356_29705 at 6909.792 kb on - strand, within AO356_29705 at 6910.068 kb on - strand, within AO356_29705 at 6910.079 kb on + strand, within AO356_29705 at 6910.080 kb on - strand, within AO356_29705
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 6,906,964 + AO356_29690 0.85 -0.6 6,907,126 + +0.7 6,907,141 - -1.4 6,907,383 + AO356_29695 0.34 -0.6 6,907,618 - AO356_29695 0.61 -0.4 6,907,618 - AO356_29695 0.61 -0.9 6,907,758 + AO356_29695 0.77 -1.2 6,907,936 - -0.2 6,907,936 - +0.0 6,908,022 + -1.0 6,908,023 - +0.7 6,908,472 + AO356_29700 0.38 -0.5 6,908,473 - AO356_29700 0.38 -0.5 6,908,772 - AO356_29700 0.60 +0.3 6,908,820 + AO356_29700 0.63 -0.8 6,908,948 + AO356_29700 0.73 +0.3 6,908,948 + AO356_29700 0.73 -1.0 6,908,997 - AO356_29700 0.77 -0.2 6,909,139 - AO356_29700 0.87 -0.1 6,909,139 - AO356_29700 0.87 +0.5 6,909,246 + +0.3 6,909,247 - -0.5 6,909,289 + -0.1 6,909,289 + -0.4 6,909,289 + +0.1 6,909,289 + +0.8 6,909,289 + -0.1 6,909,290 - +1.2 6,909,290 - +0.6 6,909,349 - -0.8 6,909,365 + -0.2 6,909,365 + +0.8 6,909,392 + -0.2 6,909,392 + +0.3 6,909,520 - AO356_29705 0.12 -0.9 6,909,573 - AO356_29705 0.16 +0.2 6,909,573 - AO356_29705 0.16 -1.2 6,909,792 - AO356_29705 0.35 -0.6 6,910,068 - AO356_29705 0.58 -0.9 6,910,079 + AO356_29705 0.59 +0.2 6,910,080 - AO356_29705 0.59 -0.3
Or see this region's nucleotide sequence