Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29465

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29455 and AO356_29460 are separated by 39 nucleotidesAO356_29460 and AO356_29465 are separated by 112 nucleotidesAO356_29465 and AO356_29470 are separated by 126 nucleotidesAO356_29470 and AO356_29475 are separated by 31 nucleotides AO356_29455: AO356_29455 - amino acid transporter, at 6,853,692 to 6,855,146 _29455 AO356_29460: AO356_29460 - hypothetical protein, at 6,855,186 to 6,855,722 _29460 AO356_29465: AO356_29465 - thiamine biosynthesis protein ThiJ, at 6,855,835 to 6,856,461 _29465 AO356_29470: AO356_29470 - TetR family transcriptional regulator, at 6,856,588 to 6,857,172 _29470 AO356_29475: AO356_29475 - lysine transporter LysE, at 6,857,204 to 6,857,833 _29475 Position (kb) 6855 6856 6857Strain fitness (log2 ratio) -2 -1 0 1 2at 6854.856 kb on + strand, within AO356_29455at 6854.856 kb on + strand, within AO356_29455at 6854.856 kb on + strand, within AO356_29455at 6854.857 kb on - strand, within AO356_29455at 6854.857 kb on - strand, within AO356_29455at 6854.996 kb on + strand, within AO356_29455at 6854.996 kb on + strand, within AO356_29455at 6854.997 kb on - strand, within AO356_29455at 6855.098 kb on + strandat 6855.145 kb on - strandat 6855.286 kb on + strand, within AO356_29460at 6855.286 kb on + strand, within AO356_29460at 6855.286 kb on + strand, within AO356_29460at 6855.442 kb on + strand, within AO356_29460at 6855.443 kb on - strand, within AO356_29460at 6855.655 kb on + strand, within AO356_29460at 6855.655 kb on + strand, within AO356_29460at 6855.655 kb on + strand, within AO356_29460at 6855.742 kb on + strandat 6855.797 kb on + strandat 6855.798 kb on - strandat 6855.798 kb on - strandat 6855.905 kb on + strand, within AO356_29465at 6855.905 kb on + strand, within AO356_29465at 6855.905 kb on + strand, within AO356_29465at 6855.906 kb on - strand, within AO356_29465at 6855.906 kb on - strand, within AO356_29465at 6856.046 kb on - strand, within AO356_29465at 6856.111 kb on - strand, within AO356_29465at 6856.111 kb on - strand, within AO356_29465at 6856.111 kb on - strand, within AO356_29465at 6856.165 kb on + strand, within AO356_29465at 6856.167 kb on + strand, within AO356_29465at 6856.167 kb on + strand, within AO356_29465at 6856.167 kb on + strand, within AO356_29465at 6856.167 kb on + strand, within AO356_29465at 6856.167 kb on + strand, within AO356_29465at 6856.168 kb on - strand, within AO356_29465at 6856.168 kb on - strand, within AO356_29465at 6856.168 kb on - strand, within AO356_29465at 6856.168 kb on - strand, within AO356_29465at 6856.282 kb on - strand, within AO356_29465at 6856.528 kb on - strandat 6856.547 kb on + strandat 6856.547 kb on + strandat 6856.548 kb on - strandat 6856.548 kb on - strandat 6856.646 kb on + strandat 6856.647 kb on - strand, within AO356_29470at 6856.711 kb on + strand, within AO356_29470at 6856.711 kb on + strand, within AO356_29470at 6856.712 kb on - strand, within AO356_29470at 6856.712 kb on - strand, within AO356_29470at 6856.774 kb on + strand, within AO356_29470at 6856.775 kb on - strand, within AO356_29470at 6856.785 kb on + strand, within AO356_29470at 6856.786 kb on - strand, within AO356_29470at 6856.786 kb on - strand, within AO356_29470at 6856.786 kb on - strand, within AO356_29470at 6856.786 kb on - strand, within AO356_29470at 6856.786 kb on - strand, within AO356_29470at 6856.796 kb on - strand, within AO356_29470at 6856.837 kb on + strand, within AO356_29470at 6856.845 kb on + strand, within AO356_29470at 6856.914 kb on - strand, within AO356_29470at 6856.986 kb on + strand, within AO356_29470at 6856.987 kb on - strand, within AO356_29470at 6857.170 kb on + strandat 6857.170 kb on + strandat 6857.170 kb on + strandat 6857.170 kb on + strandat 6857.171 kb on - strandat 6857.171 kb on - strandat 6857.171 kb on - strandat 6857.171 kb on - strandat 6857.171 kb on - strandat 6857.171 kb on - strandat 6857.171 kb on - strandat 6857.171 kb on - strandat 6857.171 kb on - strandat 6857.171 kb on - strandat 6857.366 kb on + strand, within AO356_29475at 6857.366 kb on + strand, within AO356_29475at 6857.367 kb on - strand, within AO356_29475at 6857.367 kb on - strand, within AO356_29475at 6857.367 kb on - strand, within AO356_29475at 6857.367 kb on - strand, within AO356_29475at 6857.388 kb on + strand, within AO356_29475at 6857.388 kb on + strand, within AO356_29475at 6857.389 kb on - strand, within AO356_29475at 6857.389 kb on - strand, within AO356_29475at 6857.389 kb on - strand, within AO356_29475at 6857.439 kb on + strand, within AO356_29475at 6857.439 kb on + strand, within AO356_29475at 6857.440 kb on - strand, within AO356_29475at 6857.440 kb on - strand, within AO356_29475at 6857.450 kb on + strand, within AO356_29475at 6857.450 kb on + strand, within AO356_29475at 6857.450 kb on + strand, within AO356_29475at 6857.450 kb on + strand, within AO356_29475at 6857.451 kb on - strand, within AO356_29475at 6857.451 kb on - strand, within AO356_29475at 6857.451 kb on - strand, within AO356_29475

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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6,854,856 + AO356_29455 0.80 +0.7
6,854,856 + AO356_29455 0.80 -0.3
6,854,856 + AO356_29455 0.80 -0.6
6,854,857 - AO356_29455 0.80 +1.5
6,854,857 - AO356_29455 0.80 -2.2
6,854,996 + AO356_29455 0.90 -1.7
6,854,996 + AO356_29455 0.90 -1.3
6,854,997 - AO356_29455 0.90 -1.5
6,855,098 + -0.6
6,855,145 - +0.8
6,855,286 + AO356_29460 0.19 -0.9
6,855,286 + AO356_29460 0.19 -0.3
6,855,286 + AO356_29460 0.19 +0.8
6,855,442 + AO356_29460 0.48 +0.8
6,855,443 - AO356_29460 0.48 -1.5
6,855,655 + AO356_29460 0.87 -1.2
6,855,655 + AO356_29460 0.87 +0.2
6,855,655 + AO356_29460 0.87 +1.1
6,855,742 + +2.2
6,855,797 + -0.4
6,855,798 - -0.0
6,855,798 - +0.4
6,855,905 + AO356_29465 0.11 -1.5
6,855,905 + AO356_29465 0.11 -0.2
6,855,905 + AO356_29465 0.11 +0.2
6,855,906 - AO356_29465 0.11 +0.9
6,855,906 - AO356_29465 0.11 -0.7
6,856,046 - AO356_29465 0.34 -0.1
6,856,111 - AO356_29465 0.44 +0.4
6,856,111 - AO356_29465 0.44 -0.4
6,856,111 - AO356_29465 0.44 -0.6
6,856,165 + AO356_29465 0.53 -1.2
6,856,167 + AO356_29465 0.53 +0.0
6,856,167 + AO356_29465 0.53 -1.0
6,856,167 + AO356_29465 0.53 -0.5
6,856,167 + AO356_29465 0.53 +0.1
6,856,167 + AO356_29465 0.53 +0.9
6,856,168 - AO356_29465 0.53 -0.3
6,856,168 - AO356_29465 0.53 +0.2
6,856,168 - AO356_29465 0.53 -0.3
6,856,168 - AO356_29465 0.53 -0.6
6,856,282 - AO356_29465 0.71 -0.0
6,856,528 - -0.5
6,856,547 + +0.7
6,856,547 + -0.9
6,856,548 - +0.6
6,856,548 - -2.3
6,856,646 + -0.1
6,856,647 - AO356_29470 0.10 +0.8
6,856,711 + AO356_29470 0.21 +0.9
6,856,711 + AO356_29470 0.21 -0.7
6,856,712 - AO356_29470 0.21 -1.1
6,856,712 - AO356_29470 0.21 -0.1
6,856,774 + AO356_29470 0.32 +1.4
6,856,775 - AO356_29470 0.32 +0.6
6,856,785 + AO356_29470 0.34 -0.2
6,856,786 - AO356_29470 0.34 +0.3
6,856,786 - AO356_29470 0.34 +0.2
6,856,786 - AO356_29470 0.34 +0.6
6,856,786 - AO356_29470 0.34 -0.6
6,856,786 - AO356_29470 0.34 -0.6
6,856,796 - AO356_29470 0.36 -0.1
6,856,837 + AO356_29470 0.43 -1.2
6,856,845 + AO356_29470 0.44 +0.2
6,856,914 - AO356_29470 0.56 +0.8
6,856,986 + AO356_29470 0.68 -0.5
6,856,987 - AO356_29470 0.68 +0.5
6,857,170 + +0.5
6,857,170 + +0.6
6,857,170 + -2.3
6,857,170 + -0.7
6,857,171 - -0.0
6,857,171 - -0.4
6,857,171 - +0.6
6,857,171 - -1.1
6,857,171 - -0.7
6,857,171 - +0.1
6,857,171 - -0.6
6,857,171 - +0.2
6,857,171 - +0.5
6,857,171 - -0.1
6,857,366 + AO356_29475 0.26 +0.1
6,857,366 + AO356_29475 0.26 +0.1
6,857,367 - AO356_29475 0.26 +2.1
6,857,367 - AO356_29475 0.26 +0.8
6,857,367 - AO356_29475 0.26 +1.4
6,857,367 - AO356_29475 0.26 -1.2
6,857,388 + AO356_29475 0.29 -0.0
6,857,388 + AO356_29475 0.29 -0.2
6,857,389 - AO356_29475 0.29 -0.3
6,857,389 - AO356_29475 0.29 +0.1
6,857,389 - AO356_29475 0.29 -0.5
6,857,439 + AO356_29475 0.37 +0.6
6,857,439 + AO356_29475 0.37 +0.1
6,857,440 - AO356_29475 0.37 -0.2
6,857,440 - AO356_29475 0.37 -0.8
6,857,450 + AO356_29475 0.39 +0.8
6,857,450 + AO356_29475 0.39 +0.2
6,857,450 + AO356_29475 0.39 -1.5
6,857,450 + AO356_29475 0.39 -0.1
6,857,451 - AO356_29475 0.39 -0.7
6,857,451 - AO356_29475 0.39 +1.6
6,857,451 - AO356_29475 0.39 -0.8

Or see this region's nucleotide sequence