Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28445

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28440 and AO356_28445 are separated by 118 nucleotidesAO356_28445 and AO356_28450 are separated by 112 nucleotides AO356_28440: AO356_28440 - galactose 1-dehydrogenase, at 6,611,913 to 6,612,839 _28440 AO356_28445: AO356_28445 - decarboxylase, at 6,612,958 to 6,613,752 _28445 AO356_28450: AO356_28450 - aldo/keto reductase, at 6,613,865 to 6,614,872 _28450 Position (kb) 6612 6613 6614Strain fitness (log2 ratio) -2 -1 0 1at 6612.034 kb on + strand, within AO356_28440at 6612.921 kb on + strandat 6612.922 kb on - strandat 6612.922 kb on - strandat 6612.925 kb on + strandat 6613.088 kb on + strand, within AO356_28445at 6613.531 kb on + strand, within AO356_28445at 6613.591 kb on + strand, within AO356_28445at 6613.859 kb on - strandat 6614.182 kb on + strand, within AO356_28450at 6614.182 kb on + strand, within AO356_28450at 6614.308 kb on - strand, within AO356_28450at 6614.490 kb on + strand, within AO356_28450at 6614.691 kb on + strand, within AO356_28450at 6614.692 kb on - strand, within AO356_28450at 6614.736 kb on + strand, within AO356_28450at 6614.737 kb on - strand, within AO356_28450at 6614.737 kb on - strand, within AO356_28450at 6614.737 kb on - strand, within AO356_28450

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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6,612,034 + AO356_28440 0.13 +0.6
6,612,921 + +0.3
6,612,922 - +0.3
6,612,922 - -0.3
6,612,925 + +0.1
6,613,088 + AO356_28445 0.16 -1.1
6,613,531 + AO356_28445 0.72 +1.3
6,613,591 + AO356_28445 0.80 +0.2
6,613,859 - -0.7
6,614,182 + AO356_28450 0.31 +0.1
6,614,182 + AO356_28450 0.31 -0.3
6,614,308 - AO356_28450 0.44 -0.9
6,614,490 + AO356_28450 0.62 -1.2
6,614,691 + AO356_28450 0.82 +0.1
6,614,692 - AO356_28450 0.82 -0.3
6,614,736 + AO356_28450 0.86 -2.1
6,614,737 - AO356_28450 0.87 +0.2
6,614,737 - AO356_28450 0.87 -0.9
6,614,737 - AO356_28450 0.87 +0.1

Or see this region's nucleotide sequence