Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26985 and AO356_26990 are separated by 113 nucleotides AO356_26990 and AO356_26995 overlap by 4 nucleotides
AO356_26985: AO356_26985 - histidine kinase, at 6,144,096 to 6,146,024
_26985
AO356_26990: AO356_26990 - ATP-dependent DNA helicase, at 6,146,138 to 6,148,480
_26990
AO356_26995: AO356_26995 - DNA damage response nuclease (from data) , at 6,148,477 to 6,150,207
_26995
Position (kb)
6146
6147
6148
6149 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6145.158 kb on - strand, within AO356_26985 at 6145.444 kb on + strand, within AO356_26985 at 6145.444 kb on + strand, within AO356_26985 at 6145.486 kb on + strand, within AO356_26985 at 6145.486 kb on + strand, within AO356_26985 at 6145.486 kb on + strand, within AO356_26985 at 6145.549 kb on + strand, within AO356_26985 at 6145.549 kb on + strand, within AO356_26985 at 6145.549 kb on + strand, within AO356_26985 at 6145.549 kb on + strand, within AO356_26985 at 6145.550 kb on - strand, within AO356_26985 at 6145.550 kb on - strand, within AO356_26985 at 6145.550 kb on - strand, within AO356_26985 at 6145.550 kb on - strand, within AO356_26985 at 6145.550 kb on - strand, within AO356_26985 at 6145.550 kb on - strand, within AO356_26985 at 6145.559 kb on - strand, within AO356_26985 at 6145.673 kb on + strand, within AO356_26985 at 6145.674 kb on - strand, within AO356_26985 at 6145.936 kb on + strand at 6145.936 kb on + strand at 6145.937 kb on - strand at 6145.937 kb on - strand at 6145.937 kb on - strand at 6145.937 kb on - strand at 6146.053 kb on - strand at 6146.219 kb on - strand at 6146.240 kb on + strand at 6146.241 kb on - strand at 6146.333 kb on + strand at 6146.361 kb on + strand at 6146.361 kb on + strand at 6146.361 kb on + strand at 6146.361 kb on + strand at 6146.362 kb on - strand at 6146.362 kb on - strand at 6146.362 kb on - strand at 6146.362 kb on - strand at 6146.362 kb on - strand at 6146.362 kb on - strand at 6146.362 kb on - strand at 6146.362 kb on - strand at 6146.362 kb on - strand at 6146.367 kb on + strand at 6146.367 kb on + strand at 6146.367 kb on + strand at 6146.367 kb on + strand at 6146.368 kb on - strand at 6146.368 kb on - strand at 6146.368 kb on - strand at 6146.449 kb on + strand, within AO356_26990 at 6146.659 kb on - strand, within AO356_26990 at 6146.659 kb on - strand, within AO356_26990 at 6146.659 kb on - strand, within AO356_26990 at 6146.686 kb on - strand, within AO356_26990 at 6146.686 kb on - strand, within AO356_26990 at 6146.789 kb on + strand, within AO356_26990 at 6146.789 kb on + strand, within AO356_26990 at 6146.869 kb on - strand, within AO356_26990 at 6146.869 kb on - strand, within AO356_26990 at 6146.871 kb on + strand, within AO356_26990 at 6146.871 kb on + strand, within AO356_26990 at 6146.872 kb on - strand, within AO356_26990 at 6147.076 kb on - strand, within AO356_26990 at 6147.076 kb on - strand, within AO356_26990 at 6147.187 kb on - strand, within AO356_26990 at 6147.195 kb on + strand, within AO356_26990 at 6147.214 kb on + strand, within AO356_26990 at 6147.214 kb on + strand, within AO356_26990 at 6147.214 kb on + strand, within AO356_26990 at 6147.214 kb on + strand, within AO356_26990 at 6147.214 kb on + strand, within AO356_26990 at 6147.214 kb on + strand, within AO356_26990 at 6147.214 kb on + strand, within AO356_26990 at 6147.214 kb on + strand, within AO356_26990 at 6147.215 kb on - strand, within AO356_26990 at 6147.215 kb on - strand, within AO356_26990 at 6147.215 kb on - strand, within AO356_26990 at 6147.215 kb on - strand, within AO356_26990 at 6147.215 kb on - strand, within AO356_26990 at 6147.215 kb on - strand, within AO356_26990 at 6147.321 kb on + strand, within AO356_26990 at 6147.321 kb on + strand, within AO356_26990 at 6147.322 kb on - strand, within AO356_26990 at 6147.429 kb on + strand, within AO356_26990 at 6147.430 kb on - strand, within AO356_26990 at 6147.430 kb on - strand, within AO356_26990 at 6147.430 kb on - strand, within AO356_26990 at 6147.438 kb on + strand, within AO356_26990 at 6147.765 kb on + strand, within AO356_26990 at 6147.765 kb on + strand, within AO356_26990 at 6148.098 kb on + strand, within AO356_26990 at 6148.098 kb on + strand, within AO356_26990 at 6148.099 kb on - strand, within AO356_26990 at 6148.099 kb on - strand, within AO356_26990 at 6148.099 kb on - strand, within AO356_26990 at 6148.155 kb on + strand, within AO356_26990 at 6148.155 kb on + strand, within AO356_26990 at 6148.155 kb on + strand, within AO356_26990 at 6148.156 kb on - strand, within AO356_26990 at 6148.221 kb on + strand, within AO356_26990 at 6148.511 kb on + strand at 6148.511 kb on + strand at 6148.511 kb on + strand at 6148.512 kb on - strand at 6148.583 kb on + strand at 6148.583 kb on + strand at 6148.583 kb on + strand at 6148.583 kb on + strand at 6148.584 kb on - strand at 6148.686 kb on - strand, within AO356_26995 at 6149.087 kb on + strand, within AO356_26995 at 6149.087 kb on + strand, within AO356_26995 at 6149.088 kb on - strand, within AO356_26995 at 6149.088 kb on - strand, within AO356_26995 at 6149.088 kb on - strand, within AO356_26995 at 6149.088 kb on - strand, within AO356_26995 at 6149.133 kb on - strand, within AO356_26995 at 6149.327 kb on + strand, within AO356_26995 at 6149.393 kb on + strand, within AO356_26995 at 6149.393 kb on + strand, within AO356_26995 at 6149.394 kb on - strand, within AO356_26995
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 6,145,158 - AO356_26985 0.55 -0.5 6,145,444 + AO356_26985 0.70 -0.3 6,145,444 + AO356_26985 0.70 -0.7 6,145,486 + AO356_26985 0.72 -0.5 6,145,486 + AO356_26985 0.72 +0.4 6,145,486 + AO356_26985 0.72 +0.7 6,145,549 + AO356_26985 0.75 -1.1 6,145,549 + AO356_26985 0.75 +0.4 6,145,549 + AO356_26985 0.75 +1.1 6,145,549 + AO356_26985 0.75 +1.9 6,145,550 - AO356_26985 0.75 +0.3 6,145,550 - AO356_26985 0.75 +0.1 6,145,550 - AO356_26985 0.75 -0.1 6,145,550 - AO356_26985 0.75 -1.0 6,145,550 - AO356_26985 0.75 +0.3 6,145,550 - AO356_26985 0.75 +0.4 6,145,559 - AO356_26985 0.76 +1.4 6,145,673 + AO356_26985 0.82 +1.1 6,145,674 - AO356_26985 0.82 +0.5 6,145,936 + -1.1 6,145,936 + +0.1 6,145,937 - -0.2 6,145,937 - +0.9 6,145,937 - -0.2 6,145,937 - -0.1 6,146,053 - +0.1 6,146,219 - +0.5 6,146,240 + -0.3 6,146,241 - +0.0 6,146,333 + +0.6 6,146,361 + +0.2 6,146,361 + +1.1 6,146,361 + +1.1 6,146,361 + +1.9 6,146,362 - +0.2 6,146,362 - -0.2 6,146,362 - -0.6 6,146,362 - -0.8 6,146,362 - +0.9 6,146,362 - -1.6 6,146,362 - +0.2 6,146,362 - -0.2 6,146,362 - -1.0 6,146,367 + -1.1 6,146,367 + -0.3 6,146,367 + +0.1 6,146,367 + +0.3 6,146,368 - -1.1 6,146,368 - -0.3 6,146,368 - +0.2 6,146,449 + AO356_26990 0.13 -0.2 6,146,659 - AO356_26990 0.22 +0.1 6,146,659 - AO356_26990 0.22 -0.3 6,146,659 - AO356_26990 0.22 +0.5 6,146,686 - AO356_26990 0.23 +0.1 6,146,686 - AO356_26990 0.23 +0.9 6,146,789 + AO356_26990 0.28 +0.7 6,146,789 + AO356_26990 0.28 -0.7 6,146,869 - AO356_26990 0.31 +1.1 6,146,869 - AO356_26990 0.31 -0.1 6,146,871 + AO356_26990 0.31 -0.6 6,146,871 + AO356_26990 0.31 -0.2 6,146,872 - AO356_26990 0.31 +0.4 6,147,076 - AO356_26990 0.40 -0.1 6,147,076 - AO356_26990 0.40 +3.1 6,147,187 - AO356_26990 0.45 +0.6 6,147,195 + AO356_26990 0.45 -0.3 6,147,214 + AO356_26990 0.46 +0.6 6,147,214 + AO356_26990 0.46 -0.4 6,147,214 + AO356_26990 0.46 +0.4 6,147,214 + AO356_26990 0.46 +0.4 6,147,214 + AO356_26990 0.46 +0.1 6,147,214 + AO356_26990 0.46 +0.0 6,147,214 + AO356_26990 0.46 -0.6 6,147,214 + AO356_26990 0.46 -0.2 6,147,215 - AO356_26990 0.46 -0.1 6,147,215 - AO356_26990 0.46 +2.1 6,147,215 - AO356_26990 0.46 -0.3 6,147,215 - AO356_26990 0.46 +0.5 6,147,215 - AO356_26990 0.46 +0.2 6,147,215 - AO356_26990 0.46 -0.3 6,147,321 + AO356_26990 0.50 -1.2 6,147,321 + AO356_26990 0.50 +0.3 6,147,322 - AO356_26990 0.51 -0.4 6,147,429 + AO356_26990 0.55 -1.1 6,147,430 - AO356_26990 0.55 -0.9 6,147,430 - AO356_26990 0.55 +0.4 6,147,430 - AO356_26990 0.55 -0.6 6,147,438 + AO356_26990 0.55 +1.3 6,147,765 + AO356_26990 0.69 -0.5 6,147,765 + AO356_26990 0.69 +0.5 6,148,098 + AO356_26990 0.84 +0.7 6,148,098 + AO356_26990 0.84 +0.8 6,148,099 - AO356_26990 0.84 -0.4 6,148,099 - AO356_26990 0.84 -0.3 6,148,099 - AO356_26990 0.84 -0.3 6,148,155 + AO356_26990 0.86 -0.6 6,148,155 + AO356_26990 0.86 +0.6 6,148,155 + AO356_26990 0.86 -0.3 6,148,156 - AO356_26990 0.86 -1.6 6,148,221 + AO356_26990 0.89 -0.6 6,148,511 + +0.7 6,148,511 + +0.3 6,148,511 + -2.6 6,148,512 - +0.0 6,148,583 + +1.7 6,148,583 + +0.3 6,148,583 + +0.1 6,148,583 + -0.9 6,148,584 - +0.3 6,148,686 - AO356_26995 0.12 +0.4 6,149,087 + AO356_26995 0.35 -0.6 6,149,087 + AO356_26995 0.35 +0.5 6,149,088 - AO356_26995 0.35 +0.8 6,149,088 - AO356_26995 0.35 -0.3 6,149,088 - AO356_26995 0.35 -0.7 6,149,088 - AO356_26995 0.35 +0.2 6,149,133 - AO356_26995 0.38 -0.8 6,149,327 + AO356_26995 0.49 -1.3 6,149,393 + AO356_26995 0.53 +0.4 6,149,393 + AO356_26995 0.53 +0.6 6,149,394 - AO356_26995 0.53 -0.9
Or see this region's nucleotide sequence