Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26990

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26985 and AO356_26990 are separated by 113 nucleotidesAO356_26990 and AO356_26995 overlap by 4 nucleotides AO356_26985: AO356_26985 - histidine kinase, at 6,144,096 to 6,146,024 _26985 AO356_26990: AO356_26990 - ATP-dependent DNA helicase, at 6,146,138 to 6,148,480 _26990 AO356_26995: AO356_26995 - DNA damage response nuclease (from data), at 6,148,477 to 6,150,207 _26995 Position (kb) 6146 6147 6148 6149Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6145.158 kb on - strand, within AO356_26985at 6145.444 kb on + strand, within AO356_26985at 6145.444 kb on + strand, within AO356_26985at 6145.486 kb on + strand, within AO356_26985at 6145.486 kb on + strand, within AO356_26985at 6145.486 kb on + strand, within AO356_26985at 6145.549 kb on + strand, within AO356_26985at 6145.549 kb on + strand, within AO356_26985at 6145.549 kb on + strand, within AO356_26985at 6145.549 kb on + strand, within AO356_26985at 6145.550 kb on - strand, within AO356_26985at 6145.550 kb on - strand, within AO356_26985at 6145.550 kb on - strand, within AO356_26985at 6145.550 kb on - strand, within AO356_26985at 6145.550 kb on - strand, within AO356_26985at 6145.550 kb on - strand, within AO356_26985at 6145.559 kb on - strand, within AO356_26985at 6145.673 kb on + strand, within AO356_26985at 6145.674 kb on - strand, within AO356_26985at 6145.936 kb on + strandat 6145.936 kb on + strandat 6145.937 kb on - strandat 6145.937 kb on - strandat 6145.937 kb on - strandat 6145.937 kb on - strandat 6146.053 kb on - strandat 6146.219 kb on - strandat 6146.240 kb on + strandat 6146.241 kb on - strandat 6146.333 kb on + strandat 6146.361 kb on + strandat 6146.361 kb on + strandat 6146.361 kb on + strandat 6146.361 kb on + strandat 6146.362 kb on - strandat 6146.362 kb on - strandat 6146.362 kb on - strandat 6146.362 kb on - strandat 6146.362 kb on - strandat 6146.362 kb on - strandat 6146.362 kb on - strandat 6146.362 kb on - strandat 6146.362 kb on - strandat 6146.367 kb on + strandat 6146.367 kb on + strandat 6146.367 kb on + strandat 6146.367 kb on + strandat 6146.368 kb on - strandat 6146.368 kb on - strandat 6146.368 kb on - strandat 6146.449 kb on + strand, within AO356_26990at 6146.659 kb on - strand, within AO356_26990at 6146.659 kb on - strand, within AO356_26990at 6146.659 kb on - strand, within AO356_26990at 6146.686 kb on - strand, within AO356_26990at 6146.686 kb on - strand, within AO356_26990at 6146.789 kb on + strand, within AO356_26990at 6146.789 kb on + strand, within AO356_26990at 6146.869 kb on - strand, within AO356_26990at 6146.869 kb on - strand, within AO356_26990at 6146.871 kb on + strand, within AO356_26990at 6146.871 kb on + strand, within AO356_26990at 6146.872 kb on - strand, within AO356_26990at 6147.076 kb on - strand, within AO356_26990at 6147.076 kb on - strand, within AO356_26990at 6147.187 kb on - strand, within AO356_26990at 6147.195 kb on + strand, within AO356_26990at 6147.214 kb on + strand, within AO356_26990at 6147.214 kb on + strand, within AO356_26990at 6147.214 kb on + strand, within AO356_26990at 6147.214 kb on + strand, within AO356_26990at 6147.214 kb on + strand, within AO356_26990at 6147.214 kb on + strand, within AO356_26990at 6147.214 kb on + strand, within AO356_26990at 6147.214 kb on + strand, within AO356_26990at 6147.215 kb on - strand, within AO356_26990at 6147.215 kb on - strand, within AO356_26990at 6147.215 kb on - strand, within AO356_26990at 6147.215 kb on - strand, within AO356_26990at 6147.215 kb on - strand, within AO356_26990at 6147.215 kb on - strand, within AO356_26990at 6147.321 kb on + strand, within AO356_26990at 6147.321 kb on + strand, within AO356_26990at 6147.322 kb on - strand, within AO356_26990at 6147.429 kb on + strand, within AO356_26990at 6147.430 kb on - strand, within AO356_26990at 6147.430 kb on - strand, within AO356_26990at 6147.430 kb on - strand, within AO356_26990at 6147.438 kb on + strand, within AO356_26990at 6147.765 kb on + strand, within AO356_26990at 6147.765 kb on + strand, within AO356_26990at 6148.098 kb on + strand, within AO356_26990at 6148.098 kb on + strand, within AO356_26990at 6148.099 kb on - strand, within AO356_26990at 6148.099 kb on - strand, within AO356_26990at 6148.099 kb on - strand, within AO356_26990at 6148.155 kb on + strand, within AO356_26990at 6148.155 kb on + strand, within AO356_26990at 6148.155 kb on + strand, within AO356_26990at 6148.156 kb on - strand, within AO356_26990at 6148.221 kb on + strand, within AO356_26990at 6148.511 kb on + strandat 6148.511 kb on + strandat 6148.511 kb on + strandat 6148.512 kb on - strandat 6148.583 kb on + strandat 6148.583 kb on + strandat 6148.583 kb on + strandat 6148.583 kb on + strandat 6148.584 kb on - strandat 6148.686 kb on - strand, within AO356_26995at 6149.087 kb on + strand, within AO356_26995at 6149.087 kb on + strand, within AO356_26995at 6149.088 kb on - strand, within AO356_26995at 6149.088 kb on - strand, within AO356_26995at 6149.088 kb on - strand, within AO356_26995at 6149.088 kb on - strand, within AO356_26995at 6149.133 kb on - strand, within AO356_26995at 6149.327 kb on + strand, within AO356_26995at 6149.393 kb on + strand, within AO356_26995at 6149.393 kb on + strand, within AO356_26995at 6149.394 kb on - strand, within AO356_26995

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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6,145,158 - AO356_26985 0.55 -0.5
6,145,444 + AO356_26985 0.70 -0.3
6,145,444 + AO356_26985 0.70 -0.7
6,145,486 + AO356_26985 0.72 -0.5
6,145,486 + AO356_26985 0.72 +0.4
6,145,486 + AO356_26985 0.72 +0.7
6,145,549 + AO356_26985 0.75 -1.1
6,145,549 + AO356_26985 0.75 +0.4
6,145,549 + AO356_26985 0.75 +1.1
6,145,549 + AO356_26985 0.75 +1.9
6,145,550 - AO356_26985 0.75 +0.3
6,145,550 - AO356_26985 0.75 +0.1
6,145,550 - AO356_26985 0.75 -0.1
6,145,550 - AO356_26985 0.75 -1.0
6,145,550 - AO356_26985 0.75 +0.3
6,145,550 - AO356_26985 0.75 +0.4
6,145,559 - AO356_26985 0.76 +1.4
6,145,673 + AO356_26985 0.82 +1.1
6,145,674 - AO356_26985 0.82 +0.5
6,145,936 + -1.1
6,145,936 + +0.1
6,145,937 - -0.2
6,145,937 - +0.9
6,145,937 - -0.2
6,145,937 - -0.1
6,146,053 - +0.1
6,146,219 - +0.5
6,146,240 + -0.3
6,146,241 - +0.0
6,146,333 + +0.6
6,146,361 + +0.2
6,146,361 + +1.1
6,146,361 + +1.1
6,146,361 + +1.9
6,146,362 - +0.2
6,146,362 - -0.2
6,146,362 - -0.6
6,146,362 - -0.8
6,146,362 - +0.9
6,146,362 - -1.6
6,146,362 - +0.2
6,146,362 - -0.2
6,146,362 - -1.0
6,146,367 + -1.1
6,146,367 + -0.3
6,146,367 + +0.1
6,146,367 + +0.3
6,146,368 - -1.1
6,146,368 - -0.3
6,146,368 - +0.2
6,146,449 + AO356_26990 0.13 -0.2
6,146,659 - AO356_26990 0.22 +0.1
6,146,659 - AO356_26990 0.22 -0.3
6,146,659 - AO356_26990 0.22 +0.5
6,146,686 - AO356_26990 0.23 +0.1
6,146,686 - AO356_26990 0.23 +0.9
6,146,789 + AO356_26990 0.28 +0.7
6,146,789 + AO356_26990 0.28 -0.7
6,146,869 - AO356_26990 0.31 +1.1
6,146,869 - AO356_26990 0.31 -0.1
6,146,871 + AO356_26990 0.31 -0.6
6,146,871 + AO356_26990 0.31 -0.2
6,146,872 - AO356_26990 0.31 +0.4
6,147,076 - AO356_26990 0.40 -0.1
6,147,076 - AO356_26990 0.40 +3.1
6,147,187 - AO356_26990 0.45 +0.6
6,147,195 + AO356_26990 0.45 -0.3
6,147,214 + AO356_26990 0.46 +0.6
6,147,214 + AO356_26990 0.46 -0.4
6,147,214 + AO356_26990 0.46 +0.4
6,147,214 + AO356_26990 0.46 +0.4
6,147,214 + AO356_26990 0.46 +0.1
6,147,214 + AO356_26990 0.46 +0.0
6,147,214 + AO356_26990 0.46 -0.6
6,147,214 + AO356_26990 0.46 -0.2
6,147,215 - AO356_26990 0.46 -0.1
6,147,215 - AO356_26990 0.46 +2.1
6,147,215 - AO356_26990 0.46 -0.3
6,147,215 - AO356_26990 0.46 +0.5
6,147,215 - AO356_26990 0.46 +0.2
6,147,215 - AO356_26990 0.46 -0.3
6,147,321 + AO356_26990 0.50 -1.2
6,147,321 + AO356_26990 0.50 +0.3
6,147,322 - AO356_26990 0.51 -0.4
6,147,429 + AO356_26990 0.55 -1.1
6,147,430 - AO356_26990 0.55 -0.9
6,147,430 - AO356_26990 0.55 +0.4
6,147,430 - AO356_26990 0.55 -0.6
6,147,438 + AO356_26990 0.55 +1.3
6,147,765 + AO356_26990 0.69 -0.5
6,147,765 + AO356_26990 0.69 +0.5
6,148,098 + AO356_26990 0.84 +0.7
6,148,098 + AO356_26990 0.84 +0.8
6,148,099 - AO356_26990 0.84 -0.4
6,148,099 - AO356_26990 0.84 -0.3
6,148,099 - AO356_26990 0.84 -0.3
6,148,155 + AO356_26990 0.86 -0.6
6,148,155 + AO356_26990 0.86 +0.6
6,148,155 + AO356_26990 0.86 -0.3
6,148,156 - AO356_26990 0.86 -1.6
6,148,221 + AO356_26990 0.89 -0.6
6,148,511 + +0.7
6,148,511 + +0.3
6,148,511 + -2.6
6,148,512 - +0.0
6,148,583 + +1.7
6,148,583 + +0.3
6,148,583 + +0.1
6,148,583 + -0.9
6,148,584 - +0.3
6,148,686 - AO356_26995 0.12 +0.4
6,149,087 + AO356_26995 0.35 -0.6
6,149,087 + AO356_26995 0.35 +0.5
6,149,088 - AO356_26995 0.35 +0.8
6,149,088 - AO356_26995 0.35 -0.3
6,149,088 - AO356_26995 0.35 -0.7
6,149,088 - AO356_26995 0.35 +0.2
6,149,133 - AO356_26995 0.38 -0.8
6,149,327 + AO356_26995 0.49 -1.3
6,149,393 + AO356_26995 0.53 +0.4
6,149,393 + AO356_26995 0.53 +0.6
6,149,394 - AO356_26995 0.53 -0.9

Or see this region's nucleotide sequence