Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26830 and AO356_26835 are separated by 503 nucleotides AO356_26835 and AO356_26840 are separated by 16 nucleotides AO356_26840 and AO356_26845 are separated by 15 nucleotides
AO356_26830: AO356_26830 - transcriptional regulator, at 6,109,170 to 6,109,874
_26830
AO356_26835: AO356_26835 - type VI secretion protein ImpA, at 6,110,378 to 6,112,603
_26835
AO356_26840: AO356_26840 - hypothetical protein, at 6,112,620 to 6,113,075
_26840
AO356_26845: AO356_26845 - hypothetical protein, at 6,113,091 to 6,114,206
_26845
Position (kb)
6110
6111
6112
6113 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6109.585 kb on + strand, within AO356_26830 at 6109.585 kb on + strand, within AO356_26830 at 6109.697 kb on - strand, within AO356_26830 at 6109.697 kb on - strand, within AO356_26830 at 6109.741 kb on + strand, within AO356_26830 at 6109.742 kb on - strand, within AO356_26830 at 6109.759 kb on + strand, within AO356_26830 at 6109.802 kb on - strand, within AO356_26830 at 6109.802 kb on - strand, within AO356_26830 at 6109.802 kb on - strand, within AO356_26830 at 6109.831 kb on + strand at 6109.831 kb on + strand at 6109.831 kb on + strand at 6109.832 kb on - strand at 6109.915 kb on + strand at 6110.056 kb on + strand at 6110.086 kb on + strand at 6110.086 kb on + strand at 6110.087 kb on - strand at 6110.134 kb on + strand at 6110.135 kb on - strand at 6110.153 kb on + strand at 6110.212 kb on + strand at 6110.541 kb on + strand at 6110.541 kb on + strand at 6110.542 kb on - strand at 6110.799 kb on - strand, within AO356_26835 at 6110.825 kb on + strand, within AO356_26835 at 6110.879 kb on + strand, within AO356_26835 at 6110.879 kb on + strand, within AO356_26835 at 6110.879 kb on + strand, within AO356_26835 at 6110.879 kb on + strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.880 kb on - strand, within AO356_26835 at 6110.882 kb on + strand, within AO356_26835 at 6110.883 kb on - strand, within AO356_26835 at 6110.933 kb on + strand, within AO356_26835 at 6110.933 kb on + strand, within AO356_26835 at 6110.933 kb on + strand, within AO356_26835 at 6110.933 kb on + strand, within AO356_26835 at 6110.934 kb on - strand, within AO356_26835 at 6110.934 kb on - strand, within AO356_26835 at 6110.960 kb on + strand, within AO356_26835 at 6110.979 kb on - strand, within AO356_26835 at 6111.071 kb on + strand, within AO356_26835 at 6111.170 kb on + strand, within AO356_26835 at 6111.170 kb on + strand, within AO356_26835 at 6111.171 kb on - strand, within AO356_26835 at 6111.197 kb on + strand, within AO356_26835 at 6111.198 kb on - strand, within AO356_26835 at 6111.303 kb on - strand, within AO356_26835 at 6111.329 kb on + strand, within AO356_26835 at 6111.734 kb on + strand, within AO356_26835 at 6111.758 kb on + strand, within AO356_26835 at 6112.601 kb on + strand at 6112.635 kb on + strand at 6112.635 kb on + strand at 6112.635 kb on + strand at 6112.636 kb on - strand at 6113.013 kb on + strand, within AO356_26840 at 6113.073 kb on + strand at 6113.081 kb on + strand at 6113.082 kb on - strand at 6113.338 kb on + strand, within AO356_26845 at 6113.353 kb on - strand, within AO356_26845 at 6113.512 kb on - strand, within AO356_26845
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 6,109,585 + AO356_26830 0.59 -0.1 6,109,585 + AO356_26830 0.59 -0.6 6,109,697 - AO356_26830 0.75 -1.5 6,109,697 - AO356_26830 0.75 +0.5 6,109,741 + AO356_26830 0.81 -1.7 6,109,742 - AO356_26830 0.81 +0.1 6,109,759 + AO356_26830 0.84 +0.1 6,109,802 - AO356_26830 0.90 -0.4 6,109,802 - AO356_26830 0.90 -0.5 6,109,802 - AO356_26830 0.90 +0.2 6,109,831 + -0.0 6,109,831 + +0.5 6,109,831 + -0.6 6,109,832 - -1.3 6,109,915 + +0.4 6,110,056 + -2.3 6,110,086 + +1.1 6,110,086 + +2.1 6,110,087 - +0.8 6,110,134 + +0.2 6,110,135 - +0.1 6,110,153 + -0.3 6,110,212 + -0.6 6,110,541 + -1.2 6,110,541 + -0.5 6,110,542 - +1.2 6,110,799 - AO356_26835 0.19 -0.2 6,110,825 + AO356_26835 0.20 +0.6 6,110,879 + AO356_26835 0.23 +0.6 6,110,879 + AO356_26835 0.23 -0.1 6,110,879 + AO356_26835 0.23 -0.1 6,110,879 + AO356_26835 0.23 +0.7 6,110,880 - AO356_26835 0.23 -0.4 6,110,880 - AO356_26835 0.23 +0.9 6,110,880 - AO356_26835 0.23 -0.2 6,110,880 - AO356_26835 0.23 +0.4 6,110,880 - AO356_26835 0.23 -0.2 6,110,880 - AO356_26835 0.23 -0.3 6,110,882 + AO356_26835 0.23 +0.7 6,110,883 - AO356_26835 0.23 +0.2 6,110,933 + AO356_26835 0.25 -0.7 6,110,933 + AO356_26835 0.25 +0.2 6,110,933 + AO356_26835 0.25 +0.4 6,110,933 + AO356_26835 0.25 +0.6 6,110,934 - AO356_26835 0.25 -0.7 6,110,934 - AO356_26835 0.25 -0.1 6,110,960 + AO356_26835 0.26 +0.3 6,110,979 - AO356_26835 0.27 +0.8 6,111,071 + AO356_26835 0.31 +0.7 6,111,170 + AO356_26835 0.36 +0.3 6,111,170 + AO356_26835 0.36 +0.6 6,111,171 - AO356_26835 0.36 +1.5 6,111,197 + AO356_26835 0.37 -1.6 6,111,198 - AO356_26835 0.37 +0.5 6,111,303 - AO356_26835 0.42 -0.2 6,111,329 + AO356_26835 0.43 -0.5 6,111,734 + AO356_26835 0.61 -1.5 6,111,758 + AO356_26835 0.62 +0.1 6,112,601 + -1.9 6,112,635 + -0.9 6,112,635 + +0.6 6,112,635 + -0.1 6,112,636 - -0.5 6,113,013 + AO356_26840 0.86 +0.2 6,113,073 + -0.5 6,113,081 + +0.3 6,113,082 - +1.1 6,113,338 + AO356_26845 0.22 -0.1 6,113,353 - AO356_26845 0.23 +1.1 6,113,512 - AO356_26845 0.38 +0.8
Or see this region's nucleotide sequence