Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26005

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26000 and AO356_26005 are separated by 228 nucleotidesAO356_26005 and AO356_26010 are separated by 20 nucleotides AO356_26000: AO356_26000 - glycogen debranching protein, at 5,878,587 to 5,880,746 _26000 AO356_26005: AO356_26005 - hypothetical protein, at 5,880,975 to 5,881,319 _26005 AO356_26010: AO356_26010 - maltooligosyl trehalose synthase, at 5,881,340 to 5,884,126 _26010 Position (kb) 5880 5881 5882Strain fitness (log2 ratio) -2 -1 0 1at 5880.017 kb on - strand, within AO356_26000at 5880.025 kb on + strand, within AO356_26000at 5880.217 kb on + strand, within AO356_26000at 5880.218 kb on - strand, within AO356_26000at 5880.413 kb on - strand, within AO356_26000at 5880.466 kb on + strand, within AO356_26000at 5880.467 kb on - strand, within AO356_26000at 5880.467 kb on - strand, within AO356_26000at 5880.475 kb on + strand, within AO356_26000at 5880.475 kb on + strand, within AO356_26000at 5880.476 kb on - strand, within AO356_26000at 5880.490 kb on + strand, within AO356_26000at 5880.490 kb on + strand, within AO356_26000at 5880.490 kb on + strand, within AO356_26000at 5880.490 kb on + strand, within AO356_26000at 5880.490 kb on + strand, within AO356_26000at 5880.491 kb on - strand, within AO356_26000at 5880.491 kb on - strand, within AO356_26000at 5880.491 kb on - strand, within AO356_26000at 5880.491 kb on - strand, within AO356_26000at 5880.530 kb on - strand, within AO356_26000at 5880.530 kb on - strand, within AO356_26000at 5880.746 kb on + strandat 5880.747 kb on - strandat 5880.747 kb on - strandat 5880.747 kb on - strandat 5880.774 kb on + strandat 5880.843 kb on - strandat 5881.259 kb on + strand, within AO356_26005at 5881.259 kb on + strand, within AO356_26005at 5881.260 kb on - strand, within AO356_26005at 5881.260 kb on - strand, within AO356_26005at 5881.304 kb on + strandat 5881.305 kb on - strandat 5881.352 kb on - strandat 5881.733 kb on + strand, within AO356_26010at 5881.848 kb on + strand, within AO356_26010at 5882.016 kb on + strand, within AO356_26010at 5882.017 kb on - strand, within AO356_26010at 5882.017 kb on - strand, within AO356_26010at 5882.167 kb on - strand, within AO356_26010at 5882.257 kb on - strand, within AO356_26010at 5882.257 kb on - strand, within AO356_26010

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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5,880,017 - AO356_26000 0.66 -0.3
5,880,025 + AO356_26000 0.67 -1.1
5,880,217 + AO356_26000 0.75 -0.3
5,880,218 - AO356_26000 0.76 -1.0
5,880,413 - AO356_26000 0.85 -0.9
5,880,466 + AO356_26000 0.87 +0.1
5,880,467 - AO356_26000 0.87 +0.4
5,880,467 - AO356_26000 0.87 +1.0
5,880,475 + AO356_26000 0.87 +0.1
5,880,475 + AO356_26000 0.87 +0.5
5,880,476 - AO356_26000 0.87 -1.6
5,880,490 + AO356_26000 0.88 -1.4
5,880,490 + AO356_26000 0.88 -1.6
5,880,490 + AO356_26000 0.88 +0.1
5,880,490 + AO356_26000 0.88 +0.4
5,880,490 + AO356_26000 0.88 -0.2
5,880,491 - AO356_26000 0.88 +0.6
5,880,491 - AO356_26000 0.88 -0.8
5,880,491 - AO356_26000 0.88 -0.2
5,880,491 - AO356_26000 0.88 +0.5
5,880,530 - AO356_26000 0.90 -2.3
5,880,530 - AO356_26000 0.90 +1.2
5,880,746 + -0.5
5,880,747 - +0.7
5,880,747 - +0.5
5,880,747 - -0.6
5,880,774 + -1.7
5,880,843 - +0.8
5,881,259 + AO356_26005 0.82 -0.4
5,881,259 + AO356_26005 0.82 +1.6
5,881,260 - AO356_26005 0.83 +1.5
5,881,260 - AO356_26005 0.83 -0.3
5,881,304 + -0.2
5,881,305 - -0.4
5,881,352 - +0.1
5,881,733 + AO356_26010 0.14 -0.3
5,881,848 + AO356_26010 0.18 -0.7
5,882,016 + AO356_26010 0.24 -0.5
5,882,017 - AO356_26010 0.24 -0.2
5,882,017 - AO356_26010 0.24 -1.3
5,882,167 - AO356_26010 0.30 -0.5
5,882,257 - AO356_26010 0.33 -0.0
5,882,257 - AO356_26010 0.33 -0.6

Or see this region's nucleotide sequence