Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24035

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24030 and AO356_24035 are separated by 831 nucleotidesAO356_24035 and AO356_24040 are separated by 120 nucleotides AO356_24030: AO356_24030 - sulfurtransferase, at 5,386,231 to 5,388,996 _24030 AO356_24035: AO356_24035 - hypothetical protein, at 5,389,828 to 5,390,346 _24035 AO356_24040: AO356_24040 - alpha/beta hydrolase, at 5,390,467 to 5,391,561 _24040 Position (kb) 5389 5390 5391Strain fitness (log2 ratio) -1 0 1at 5389.068 kb on - strandat 5389.068 kb on - strandat 5389.203 kb on + strandat 5389.476 kb on - strandat 5389.761 kb on + strandat 5389.957 kb on + strand, within AO356_24035at 5389.957 kb on + strand, within AO356_24035at 5389.957 kb on + strand, within AO356_24035at 5389.957 kb on + strand, within AO356_24035at 5389.957 kb on + strand, within AO356_24035at 5389.957 kb on + strand, within AO356_24035at 5389.958 kb on - strand, within AO356_24035at 5389.958 kb on - strand, within AO356_24035at 5389.958 kb on - strand, within AO356_24035at 5389.958 kb on - strand, within AO356_24035at 5389.958 kb on - strand, within AO356_24035at 5389.958 kb on - strand, within AO356_24035at 5389.958 kb on - strand, within AO356_24035at 5389.958 kb on - strand, within AO356_24035at 5390.068 kb on + strand, within AO356_24035at 5390.068 kb on + strand, within AO356_24035at 5390.068 kb on + strand, within AO356_24035at 5390.068 kb on + strand, within AO356_24035at 5390.069 kb on - strand, within AO356_24035at 5390.069 kb on - strand, within AO356_24035at 5390.091 kb on + strand, within AO356_24035at 5390.126 kb on - strand, within AO356_24035at 5390.126 kb on - strand, within AO356_24035at 5390.300 kb on + strandat 5390.301 kb on - strandat 5390.301 kb on - strandat 5390.301 kb on - strandat 5390.344 kb on + strandat 5390.345 kb on - strandat 5390.345 kb on - strandat 5390.345 kb on - strandat 5390.345 kb on - strandat 5390.391 kb on - strandat 5390.395 kb on - strandat 5390.472 kb on + strandat 5390.472 kb on + strandat 5390.472 kb on + strandat 5390.472 kb on + strandat 5390.472 kb on + strandat 5390.472 kb on + strandat 5390.473 kb on - strandat 5390.524 kb on + strandat 5390.525 kb on - strandat 5390.634 kb on + strand, within AO356_24040at 5390.635 kb on - strand, within AO356_24040at 5390.647 kb on + strand, within AO356_24040at 5390.678 kb on + strand, within AO356_24040at 5390.679 kb on - strand, within AO356_24040at 5390.695 kb on + strand, within AO356_24040at 5390.696 kb on - strand, within AO356_24040at 5390.696 kb on - strand, within AO356_24040at 5390.696 kb on - strand, within AO356_24040at 5390.704 kb on + strand, within AO356_24040at 5390.838 kb on + strand, within AO356_24040at 5390.838 kb on + strand, within AO356_24040at 5390.839 kb on - strand, within AO356_24040at 5390.842 kb on + strand, within AO356_24040at 5390.842 kb on + strand, within AO356_24040at 5390.843 kb on - strand, within AO356_24040

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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5,389,068 - +1.0
5,389,068 - +0.2
5,389,203 + -0.0
5,389,476 - -0.1
5,389,761 + +1.2
5,389,957 + AO356_24035 0.25 -0.5
5,389,957 + AO356_24035 0.25 -1.6
5,389,957 + AO356_24035 0.25 -0.5
5,389,957 + AO356_24035 0.25 -0.8
5,389,957 + AO356_24035 0.25 -0.1
5,389,957 + AO356_24035 0.25 +0.5
5,389,958 - AO356_24035 0.25 -1.1
5,389,958 - AO356_24035 0.25 +1.4
5,389,958 - AO356_24035 0.25 -0.1
5,389,958 - AO356_24035 0.25 +0.1
5,389,958 - AO356_24035 0.25 +0.3
5,389,958 - AO356_24035 0.25 -0.1
5,389,958 - AO356_24035 0.25 -0.9
5,389,958 - AO356_24035 0.25 -1.4
5,390,068 + AO356_24035 0.46 -0.1
5,390,068 + AO356_24035 0.46 -0.9
5,390,068 + AO356_24035 0.46 -0.1
5,390,068 + AO356_24035 0.46 +1.1
5,390,069 - AO356_24035 0.46 -0.7
5,390,069 - AO356_24035 0.46 +0.1
5,390,091 + AO356_24035 0.51 -0.5
5,390,126 - AO356_24035 0.57 -0.1
5,390,126 - AO356_24035 0.57 +0.1
5,390,300 + -0.0
5,390,301 - -0.0
5,390,301 - -0.6
5,390,301 - -0.1
5,390,344 + -0.5
5,390,345 - +0.5
5,390,345 - -0.4
5,390,345 - +1.0
5,390,345 - -0.2
5,390,391 - +1.3
5,390,395 - +0.7
5,390,472 + +0.8
5,390,472 + +0.3
5,390,472 + +0.5
5,390,472 + +0.2
5,390,472 + +0.4
5,390,472 + +0.8
5,390,473 - -0.9
5,390,524 + +0.3
5,390,525 - -0.3
5,390,634 + AO356_24040 0.15 +0.9
5,390,635 - AO356_24040 0.15 -0.3
5,390,647 + AO356_24040 0.16 +0.3
5,390,678 + AO356_24040 0.19 -0.1
5,390,679 - AO356_24040 0.19 -0.2
5,390,695 + AO356_24040 0.21 +1.3
5,390,696 - AO356_24040 0.21 -0.1
5,390,696 - AO356_24040 0.21 +0.5
5,390,696 - AO356_24040 0.21 -0.5
5,390,704 + AO356_24040 0.22 -1.3
5,390,838 + AO356_24040 0.34 +0.4
5,390,838 + AO356_24040 0.34 +0.7
5,390,839 - AO356_24040 0.34 +0.5
5,390,842 + AO356_24040 0.34 -0.2
5,390,842 + AO356_24040 0.34 -0.1
5,390,843 - AO356_24040 0.34 -0.1

Or see this region's nucleotide sequence