Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21115

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21110 and AO356_21115 are separated by 251 nucleotidesAO356_21115 and AO356_21120 are separated by 424 nucleotides AO356_21110: AO356_21110 - non-ribosomal peptide synthetase, at 4,719,275 to 4,731,760 _21110 AO356_21115: AO356_21115 - alpha/beta hydrolase, at 4,732,012 to 4,732,974 _21115 AO356_21120: AO356_21120 - TonB-dependent receptor, at 4,733,399 to 4,735,849 _21120 Position (kb) 4732 4733Strain fitness (log2 ratio) -2 -1 0 1 2at 4731.087 kb on - strandat 4731.435 kb on - strandat 4731.435 kb on - strandat 4731.435 kb on - strandat 4731.435 kb on - strandat 4731.500 kb on + strandat 4731.576 kb on - strandat 4731.626 kb on + strandat 4731.759 kb on - strandat 4731.784 kb on + strandat 4731.785 kb on - strandat 4731.804 kb on - strandat 4731.920 kb on - strandat 4731.993 kb on + strandat 4731.994 kb on - strandat 4731.994 kb on - strandat 4731.997 kb on + strandat 4731.997 kb on + strandat 4731.997 kb on + strandat 4731.997 kb on + strandat 4731.997 kb on + strandat 4731.997 kb on + strandat 4731.997 kb on + strandat 4731.998 kb on - strandat 4731.998 kb on - strandat 4731.998 kb on - strandat 4731.998 kb on - strandat 4732.289 kb on - strand, within AO356_21115at 4732.289 kb on - strand, within AO356_21115at 4732.649 kb on - strand, within AO356_21115at 4732.690 kb on + strand, within AO356_21115at 4732.690 kb on + strand, within AO356_21115at 4732.888 kb on + strandat 4732.889 kb on - strandat 4732.930 kb on + strandat 4732.930 kb on + strandat 4732.930 kb on + strandat 4732.931 kb on - strandat 4733.400 kb on + strandat 4733.400 kb on + strandat 4733.410 kb on - strandat 4733.410 kb on - strandat 4733.445 kb on + strandat 4733.445 kb on + strandat 4733.559 kb on + strandat 4733.560 kb on - strandat 4733.560 kb on - strandat 4733.754 kb on + strand, within AO356_21120at 4733.754 kb on + strand, within AO356_21120at 4733.770 kb on - strand, within AO356_21120at 4733.784 kb on + strand, within AO356_21120at 4733.967 kb on + strand, within AO356_21120at 4733.968 kb on - strand, within AO356_21120

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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4,731,087 - +0.2
4,731,435 - +0.7
4,731,435 - -0.7
4,731,435 - -0.2
4,731,435 - +0.6
4,731,500 + +0.5
4,731,576 - +0.8
4,731,626 + +1.0
4,731,759 - -0.5
4,731,784 + -1.9
4,731,785 - +0.4
4,731,804 - +0.5
4,731,920 - -0.3
4,731,993 + -0.9
4,731,994 - -0.2
4,731,994 - +0.3
4,731,997 + +0.1
4,731,997 + +0.1
4,731,997 + -0.2
4,731,997 + +1.3
4,731,997 + -1.4
4,731,997 + +0.5
4,731,997 + +0.5
4,731,998 - -0.5
4,731,998 - +0.1
4,731,998 - +1.9
4,731,998 - +0.5
4,732,289 - AO356_21115 0.29 +0.4
4,732,289 - AO356_21115 0.29 +0.5
4,732,649 - AO356_21115 0.66 +2.0
4,732,690 + AO356_21115 0.70 +0.5
4,732,690 + AO356_21115 0.70 -0.1
4,732,888 + +0.4
4,732,889 - +1.0
4,732,930 + +0.1
4,732,930 + -0.6
4,732,930 + +0.4
4,732,931 - -0.1
4,733,400 + +0.1
4,733,400 + -0.3
4,733,410 - +0.2
4,733,410 - +0.3
4,733,445 + -1.7
4,733,445 + -0.2
4,733,559 + +0.3
4,733,560 - -0.1
4,733,560 - -1.0
4,733,754 + AO356_21120 0.14 +0.8
4,733,754 + AO356_21120 0.14 -0.3
4,733,770 - AO356_21120 0.15 +1.1
4,733,784 + AO356_21120 0.16 -0.7
4,733,967 + AO356_21120 0.23 +0.9
4,733,968 - AO356_21120 0.23 +0.3

Or see this region's nucleotide sequence