Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18460 and AO356_18465 are separated by 248 nucleotides AO356_18465 and AO356_18470 are separated by 67 nucleotides AO356_18470 and AO356_18475 are separated by 226 nucleotides
AO356_18460: AO356_18460 - thiol oxidoreductase, at 4,155,829 to 4,157,256
_18460
AO356_18465: AO356_18465 - histidine kinase, at 4,157,505 to 4,158,845
_18465
AO356_18470: AO356_18470 - LTXXQ domain protein, at 4,158,913 to 4,159,350
_18470
AO356_18475: AO356_18475 - chemotaxis protein CheY, at 4,159,577 to 4,160,254
_18475
Position (kb)
4157
4158
4159 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4156.668 kb on - strand, within AO356_18460 at 4156.748 kb on + strand, within AO356_18460 at 4156.748 kb on + strand, within AO356_18460 at 4156.749 kb on - strand, within AO356_18460 at 4156.749 kb on - strand, within AO356_18460 at 4156.749 kb on - strand, within AO356_18460 at 4156.764 kb on + strand, within AO356_18460 at 4156.765 kb on - strand, within AO356_18460 at 4156.828 kb on + strand, within AO356_18460 at 4156.991 kb on - strand, within AO356_18460 at 4156.991 kb on - strand, within AO356_18460 at 4157.234 kb on - strand at 4157.234 kb on - strand at 4157.274 kb on - strand at 4157.274 kb on - strand at 4157.297 kb on + strand at 4157.298 kb on - strand at 4157.319 kb on + strand at 4157.672 kb on - strand, within AO356_18465 at 4158.156 kb on + strand, within AO356_18465 at 4158.156 kb on + strand, within AO356_18465 at 4158.156 kb on + strand, within AO356_18465 at 4158.156 kb on + strand, within AO356_18465 at 4158.157 kb on - strand, within AO356_18465 at 4158.157 kb on - strand, within AO356_18465 at 4158.157 kb on - strand, within AO356_18465 at 4158.451 kb on + strand, within AO356_18465 at 4158.455 kb on + strand, within AO356_18465 at 4158.455 kb on + strand, within AO356_18465 at 4158.455 kb on + strand, within AO356_18465 at 4158.455 kb on + strand, within AO356_18465 at 4158.455 kb on + strand, within AO356_18465 at 4158.455 kb on + strand, within AO356_18465 at 4158.455 kb on + strand, within AO356_18465 at 4158.456 kb on - strand, within AO356_18465 at 4158.456 kb on - strand, within AO356_18465 at 4158.456 kb on - strand, within AO356_18465 at 4158.463 kb on + strand, within AO356_18465 at 4158.463 kb on + strand, within AO356_18465 at 4158.463 kb on + strand, within AO356_18465 at 4158.464 kb on - strand, within AO356_18465 at 4158.464 kb on - strand, within AO356_18465 at 4158.464 kb on - strand, within AO356_18465 at 4158.583 kb on - strand, within AO356_18465 at 4158.628 kb on + strand, within AO356_18465 at 4158.629 kb on - strand, within AO356_18465 at 4158.685 kb on + strand, within AO356_18465 at 4158.714 kb on - strand at 4158.761 kb on + strand at 4158.848 kb on + strand at 4158.848 kb on + strand at 4158.914 kb on + strand at 4158.914 kb on + strand at 4158.914 kb on + strand at 4158.914 kb on + strand at 4158.915 kb on - strand at 4158.915 kb on - strand at 4159.121 kb on + strand, within AO356_18470 at 4159.121 kb on + strand, within AO356_18470 at 4159.121 kb on + strand, within AO356_18470 at 4159.121 kb on + strand, within AO356_18470 at 4159.121 kb on + strand, within AO356_18470 at 4159.122 kb on - strand, within AO356_18470 at 4159.122 kb on - strand, within AO356_18470 at 4159.122 kb on - strand, within AO356_18470 at 4159.122 kb on - strand, within AO356_18470 at 4159.122 kb on - strand, within AO356_18470 at 4159.122 kb on - strand, within AO356_18470 at 4159.214 kb on + strand, within AO356_18470 at 4159.445 kb on + strand at 4159.544 kb on + strand at 4159.545 kb on - strand at 4159.545 kb on - strand at 4159.545 kb on - strand at 4159.587 kb on + strand at 4159.587 kb on + strand at 4159.588 kb on - strand at 4159.588 kb on - strand at 4159.588 kb on - strand at 4159.588 kb on - strand at 4159.588 kb on - strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.590 kb on + strand at 4159.591 kb on - strand at 4159.593 kb on + strand at 4159.593 kb on + strand at 4159.692 kb on + strand, within AO356_18475 at 4159.693 kb on - strand, within AO356_18475
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 4,156,668 - AO356_18460 0.59 -0.6 4,156,748 + AO356_18460 0.64 -0.8 4,156,748 + AO356_18460 0.64 +0.3 4,156,749 - AO356_18460 0.64 -1.7 4,156,749 - AO356_18460 0.64 -0.3 4,156,749 - AO356_18460 0.64 +0.1 4,156,764 + AO356_18460 0.65 +0.9 4,156,765 - AO356_18460 0.66 +0.7 4,156,828 + AO356_18460 0.70 -0.0 4,156,991 - AO356_18460 0.81 +1.3 4,156,991 - AO356_18460 0.81 -0.7 4,157,234 - -0.5 4,157,234 - -1.3 4,157,274 - -0.3 4,157,274 - -0.2 4,157,297 + -1.2 4,157,298 - +1.3 4,157,319 + +0.9 4,157,672 - AO356_18465 0.12 -0.3 4,158,156 + AO356_18465 0.49 -0.7 4,158,156 + AO356_18465 0.49 -1.1 4,158,156 + AO356_18465 0.49 -0.2 4,158,156 + AO356_18465 0.49 +0.0 4,158,157 - AO356_18465 0.49 +0.0 4,158,157 - AO356_18465 0.49 +0.1 4,158,157 - AO356_18465 0.49 -0.4 4,158,451 + AO356_18465 0.71 -0.2 4,158,455 + AO356_18465 0.71 +0.6 4,158,455 + AO356_18465 0.71 -0.1 4,158,455 + AO356_18465 0.71 -0.4 4,158,455 + AO356_18465 0.71 +0.1 4,158,455 + AO356_18465 0.71 -0.3 4,158,455 + AO356_18465 0.71 +0.2 4,158,455 + AO356_18465 0.71 -0.4 4,158,456 - AO356_18465 0.71 -0.3 4,158,456 - AO356_18465 0.71 +0.0 4,158,456 - AO356_18465 0.71 +0.1 4,158,463 + AO356_18465 0.71 -0.5 4,158,463 + AO356_18465 0.71 -0.2 4,158,463 + AO356_18465 0.71 +0.1 4,158,464 - AO356_18465 0.72 +0.1 4,158,464 - AO356_18465 0.72 -1.2 4,158,464 - AO356_18465 0.72 -0.4 4,158,583 - AO356_18465 0.80 +0.6 4,158,628 + AO356_18465 0.84 -0.4 4,158,629 - AO356_18465 0.84 +0.3 4,158,685 + AO356_18465 0.88 +0.0 4,158,714 - +0.0 4,158,761 + -0.2 4,158,848 + -0.3 4,158,848 + -1.0 4,158,914 + -0.5 4,158,914 + -0.8 4,158,914 + +1.1 4,158,914 + +0.9 4,158,915 - +0.8 4,158,915 - +0.3 4,159,121 + AO356_18470 0.47 -0.3 4,159,121 + AO356_18470 0.47 -0.2 4,159,121 + AO356_18470 0.47 +0.4 4,159,121 + AO356_18470 0.47 -0.3 4,159,121 + AO356_18470 0.47 -1.1 4,159,122 - AO356_18470 0.48 -0.2 4,159,122 - AO356_18470 0.48 -0.3 4,159,122 - AO356_18470 0.48 -1.2 4,159,122 - AO356_18470 0.48 -1.9 4,159,122 - AO356_18470 0.48 -1.1 4,159,122 - AO356_18470 0.48 +0.2 4,159,214 + AO356_18470 0.69 -0.1 4,159,445 + -1.3 4,159,544 + -0.6 4,159,545 - +1.9 4,159,545 - +1.0 4,159,545 - -1.2 4,159,587 + +0.4 4,159,587 + -0.4 4,159,588 - -0.1 4,159,588 - +0.8 4,159,588 - -0.3 4,159,588 - -0.8 4,159,588 - +0.8 4,159,590 + -0.7 4,159,590 + -0.1 4,159,590 + -0.1 4,159,590 + -0.4 4,159,590 + -0.4 4,159,590 + -2.1 4,159,590 + -1.1 4,159,590 + +0.0 4,159,591 - +0.4 4,159,593 + -0.3 4,159,593 + +0.6 4,159,692 + AO356_18475 0.17 -0.2 4,159,693 - AO356_18475 0.17 -0.7
Or see this region's nucleotide sequence