Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_11335 and AO356_11340 are separated by 84 nucleotides AO356_11340 and AO356_11345 are separated by 84 nucleotides AO356_11345 and AO356_11350 are separated by 383 nucleotides
AO356_11335: AO356_11335 - LysR family transcriptional regulator, at 2,569,923 to 2,570,873
_11335
AO356_11340: AO356_11340 - NADH-flavin reductase, at 2,570,958 to 2,571,617
_11340
AO356_11345: AO356_11345 - 4,5-dioxygenase, at 2,571,702 to 2,572,040
_11345
AO356_11350: AO356_11350 - citrate transporter, at 2,572,424 to 2,573,731
_11350
Position (kb)
2570
2571
2572 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2569.998 kb on - strand at 2570.097 kb on + strand, within AO356_11335 at 2570.098 kb on - strand, within AO356_11335 at 2570.098 kb on - strand, within AO356_11335 at 2570.551 kb on + strand, within AO356_11335 at 2570.552 kb on - strand, within AO356_11335 at 2570.610 kb on + strand, within AO356_11335 at 2570.610 kb on + strand, within AO356_11335 at 2570.610 kb on + strand, within AO356_11335 at 2570.610 kb on + strand, within AO356_11335 at 2570.610 kb on + strand, within AO356_11335 at 2570.610 kb on + strand, within AO356_11335 at 2570.610 kb on + strand, within AO356_11335 at 2570.610 kb on + strand, within AO356_11335 at 2570.610 kb on + strand, within AO356_11335 at 2570.610 kb on + strand, within AO356_11335 at 2570.611 kb on - strand, within AO356_11335 at 2570.611 kb on - strand, within AO356_11335 at 2570.611 kb on - strand, within AO356_11335 at 2570.611 kb on - strand, within AO356_11335 at 2570.611 kb on - strand, within AO356_11335 at 2570.611 kb on - strand, within AO356_11335 at 2570.611 kb on - strand, within AO356_11335 at 2570.611 kb on - strand, within AO356_11335 at 2570.611 kb on - strand, within AO356_11335 at 2570.611 kb on - strand, within AO356_11335 at 2570.679 kb on - strand, within AO356_11335 at 2570.683 kb on + strand, within AO356_11335 at 2570.683 kb on + strand, within AO356_11335 at 2570.684 kb on - strand, within AO356_11335 at 2570.684 kb on - strand, within AO356_11335 at 2570.742 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.745 kb on + strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.746 kb on - strand, within AO356_11335 at 2570.765 kb on + strand, within AO356_11335 at 2570.765 kb on + strand, within AO356_11335 at 2570.766 kb on - strand, within AO356_11335 at 2570.959 kb on + strand at 2570.959 kb on + strand at 2570.959 kb on + strand at 2570.959 kb on + strand at 2570.960 kb on - strand at 2570.960 kb on - strand at 2570.960 kb on - strand at 2570.960 kb on - strand at 2571.009 kb on + strand at 2571.009 kb on + strand at 2571.010 kb on - strand at 2571.010 kb on - strand at 2571.010 kb on - strand at 2571.010 kb on - strand at 2571.010 kb on - strand at 2571.491 kb on + strand, within AO356_11340 at 2571.577 kb on + strand at 2571.577 kb on + strand at 2571.577 kb on + strand at 2571.577 kb on + strand at 2571.577 kb on + strand at 2571.577 kb on + strand at 2571.578 kb on - strand at 2571.578 kb on - strand at 2571.578 kb on - strand at 2571.578 kb on - strand at 2571.578 kb on - strand at 2571.578 kb on - strand at 2571.578 kb on - strand at 2571.578 kb on - strand at 2571.633 kb on + strand at 2571.644 kb on + strand at 2571.644 kb on + strand at 2571.644 kb on + strand at 2571.644 kb on + strand at 2571.644 kb on + strand at 2571.644 kb on + strand at 2571.644 kb on + strand at 2571.644 kb on + strand at 2571.644 kb on + strand at 2571.644 kb on + strand at 2571.644 kb on + strand at 2571.645 kb on - strand at 2571.645 kb on - strand at 2571.645 kb on - strand at 2571.645 kb on - strand at 2571.645 kb on - strand at 2571.645 kb on - strand at 2571.645 kb on - strand at 2571.645 kb on - strand at 2571.645 kb on - strand at 2571.645 kb on - strand at 2571.645 kb on - strand at 2571.697 kb on + strand at 2571.697 kb on + strand at 2571.697 kb on + strand at 2571.698 kb on - strand at 2571.698 kb on - strand at 2571.698 kb on - strand at 2571.698 kb on - strand at 2571.720 kb on + strand at 2571.721 kb on - strand at 2571.735 kb on + strand at 2571.735 kb on + strand at 2571.735 kb on + strand at 2571.735 kb on + strand at 2571.735 kb on + strand at 2571.736 kb on - strand, within AO356_11345 at 2571.736 kb on - strand, within AO356_11345 at 2571.879 kb on + strand, within AO356_11345 at 2571.879 kb on + strand, within AO356_11345 at 2571.880 kb on - strand, within AO356_11345 at 2571.880 kb on - strand, within AO356_11345 at 2571.880 kb on - strand, within AO356_11345 at 2571.880 kb on - strand, within AO356_11345 at 2571.880 kb on - strand, within AO356_11345 at 2571.880 kb on - strand, within AO356_11345 at 2572.025 kb on + strand at 2572.025 kb on + strand at 2572.025 kb on + strand at 2572.025 kb on + strand at 2572.205 kb on + strand at 2572.205 kb on + strand at 2572.206 kb on - strand at 2572.214 kb on + strand at 2572.214 kb on + strand at 2572.214 kb on + strand at 2572.284 kb on + strand at 2572.284 kb on + strand at 2572.285 kb on - strand at 2572.285 kb on - strand at 2572.285 kb on - strand at 2572.285 kb on - strand at 2572.285 kb on - strand at 2572.285 kb on - strand at 2572.285 kb on - strand at 2572.319 kb on - strand at 2572.397 kb on - strand at 2572.416 kb on + strand at 2572.416 kb on + strand at 2572.416 kb on + strand at 2572.416 kb on + strand at 2572.417 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 2,569,998 - +0.5 2,570,097 + AO356_11335 0.18 +0.8 2,570,098 - AO356_11335 0.18 +0.2 2,570,098 - AO356_11335 0.18 -0.8 2,570,551 + AO356_11335 0.66 +0.2 2,570,552 - AO356_11335 0.66 +0.5 2,570,610 + AO356_11335 0.72 +0.5 2,570,610 + AO356_11335 0.72 +0.2 2,570,610 + AO356_11335 0.72 -2.0 2,570,610 + AO356_11335 0.72 +0.4 2,570,610 + AO356_11335 0.72 +0.7 2,570,610 + AO356_11335 0.72 +0.7 2,570,610 + AO356_11335 0.72 +0.4 2,570,610 + AO356_11335 0.72 -0.5 2,570,610 + AO356_11335 0.72 -0.4 2,570,610 + AO356_11335 0.72 -0.0 2,570,611 - AO356_11335 0.72 +0.8 2,570,611 - AO356_11335 0.72 +1.0 2,570,611 - AO356_11335 0.72 +0.1 2,570,611 - AO356_11335 0.72 +0.4 2,570,611 - AO356_11335 0.72 -0.4 2,570,611 - AO356_11335 0.72 +1.0 2,570,611 - AO356_11335 0.72 -0.5 2,570,611 - AO356_11335 0.72 +1.6 2,570,611 - AO356_11335 0.72 +0.7 2,570,611 - AO356_11335 0.72 +0.6 2,570,679 - AO356_11335 0.79 +0.6 2,570,683 + AO356_11335 0.80 +0.5 2,570,683 + AO356_11335 0.80 -0.1 2,570,684 - AO356_11335 0.80 +0.4 2,570,684 - AO356_11335 0.80 +0.2 2,570,742 + AO356_11335 0.86 +0.4 2,570,745 + AO356_11335 0.86 -0.7 2,570,745 + AO356_11335 0.86 -0.3 2,570,745 + AO356_11335 0.86 +0.7 2,570,745 + AO356_11335 0.86 +0.7 2,570,745 + AO356_11335 0.86 +0.3 2,570,745 + AO356_11335 0.86 -0.1 2,570,745 + AO356_11335 0.86 +0.8 2,570,745 + AO356_11335 0.86 +0.9 2,570,745 + AO356_11335 0.86 +0.2 2,570,745 + AO356_11335 0.86 -0.4 2,570,745 + AO356_11335 0.86 +0.4 2,570,745 + AO356_11335 0.86 +2.6 2,570,745 + AO356_11335 0.86 -0.2 2,570,745 + AO356_11335 0.86 -1.8 2,570,745 + AO356_11335 0.86 +0.4 2,570,745 + AO356_11335 0.86 +0.1 2,570,746 - AO356_11335 0.87 -0.8 2,570,746 - AO356_11335 0.87 -0.4 2,570,746 - AO356_11335 0.87 +1.0 2,570,746 - AO356_11335 0.87 +1.6 2,570,746 - AO356_11335 0.87 -1.5 2,570,746 - AO356_11335 0.87 -0.3 2,570,746 - AO356_11335 0.87 -1.5 2,570,746 - AO356_11335 0.87 +0.6 2,570,746 - AO356_11335 0.87 +0.8 2,570,746 - AO356_11335 0.87 -1.9 2,570,746 - AO356_11335 0.87 -0.1 2,570,746 - AO356_11335 0.87 +0.4 2,570,765 + AO356_11335 0.89 -0.1 2,570,765 + AO356_11335 0.89 +0.4 2,570,766 - AO356_11335 0.89 -1.4 2,570,959 + -0.6 2,570,959 + -0.4 2,570,959 + -0.6 2,570,959 + +1.2 2,570,960 - -0.2 2,570,960 - -1.3 2,570,960 - -1.3 2,570,960 - +0.1 2,571,009 + +0.6 2,571,009 + -0.9 2,571,010 - -1.0 2,571,010 - +0.4 2,571,010 - +0.4 2,571,010 - -0.2 2,571,010 - -0.1 2,571,491 + AO356_11340 0.81 +0.6 2,571,577 + -0.4 2,571,577 + -0.7 2,571,577 + -0.0 2,571,577 + -1.7 2,571,577 + -1.1 2,571,577 + +1.1 2,571,578 - +0.2 2,571,578 - +1.2 2,571,578 - +1.1 2,571,578 - -1.2 2,571,578 - +0.1 2,571,578 - +1.0 2,571,578 - -0.5 2,571,578 - +0.9 2,571,633 + +2.4 2,571,644 + +0.4 2,571,644 + +0.3 2,571,644 + -0.7 2,571,644 + +1.1 2,571,644 + +1.3 2,571,644 + +0.8 2,571,644 + +0.6 2,571,644 + -0.6 2,571,644 + +0.3 2,571,644 + +1.2 2,571,644 + +0.4 2,571,645 - -2.7 2,571,645 - +0.1 2,571,645 - +0.6 2,571,645 - -0.5 2,571,645 - -0.4 2,571,645 - -0.4 2,571,645 - -0.0 2,571,645 - -1.2 2,571,645 - +0.2 2,571,645 - +0.9 2,571,645 - -0.8 2,571,697 + +0.9 2,571,697 + +1.0 2,571,697 + +1.5 2,571,698 - -1.6 2,571,698 - -0.2 2,571,698 - -0.2 2,571,698 - -0.5 2,571,720 + -0.0 2,571,721 - -0.3 2,571,735 + +0.5 2,571,735 + +0.6 2,571,735 + +0.2 2,571,735 + -0.5 2,571,735 + +0.5 2,571,736 - AO356_11345 0.10 -0.6 2,571,736 - AO356_11345 0.10 +0.0 2,571,879 + AO356_11345 0.52 +0.3 2,571,879 + AO356_11345 0.52 +1.2 2,571,880 - AO356_11345 0.53 -0.1 2,571,880 - AO356_11345 0.53 +0.2 2,571,880 - AO356_11345 0.53 +0.0 2,571,880 - AO356_11345 0.53 +0.0 2,571,880 - AO356_11345 0.53 +0.3 2,571,880 - AO356_11345 0.53 +0.4 2,572,025 + -0.4 2,572,025 + +0.5 2,572,025 + -0.8 2,572,025 + -2.3 2,572,205 + -0.4 2,572,205 + -0.2 2,572,206 - -0.0 2,572,214 + -1.7 2,572,214 + +0.2 2,572,214 + +0.9 2,572,284 + +1.0 2,572,284 + +1.1 2,572,285 - -0.8 2,572,285 - +0.3 2,572,285 - +1.1 2,572,285 - -0.0 2,572,285 - -0.3 2,572,285 - +0.6 2,572,285 - +0.9 2,572,319 - +0.6 2,572,397 - -0.4 2,572,416 + -0.2 2,572,416 + -1.3 2,572,416 + +0.9 2,572,416 + -0.1 2,572,417 - +0.2
Or see this region's nucleotide sequence