Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11340

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11335 and AO356_11340 are separated by 84 nucleotidesAO356_11340 and AO356_11345 are separated by 84 nucleotidesAO356_11345 and AO356_11350 are separated by 383 nucleotides AO356_11335: AO356_11335 - LysR family transcriptional regulator, at 2,569,923 to 2,570,873 _11335 AO356_11340: AO356_11340 - NADH-flavin reductase, at 2,570,958 to 2,571,617 _11340 AO356_11345: AO356_11345 - 4,5-dioxygenase, at 2,571,702 to 2,572,040 _11345 AO356_11350: AO356_11350 - citrate transporter, at 2,572,424 to 2,573,731 _11350 Position (kb) 2570 2571 2572Strain fitness (log2 ratio) -2 -1 0 1 2at 2569.998 kb on - strandat 2570.097 kb on + strand, within AO356_11335at 2570.098 kb on - strand, within AO356_11335at 2570.098 kb on - strand, within AO356_11335at 2570.551 kb on + strand, within AO356_11335at 2570.552 kb on - strand, within AO356_11335at 2570.610 kb on + strand, within AO356_11335at 2570.610 kb on + strand, within AO356_11335at 2570.610 kb on + strand, within AO356_11335at 2570.610 kb on + strand, within AO356_11335at 2570.610 kb on + strand, within AO356_11335at 2570.610 kb on + strand, within AO356_11335at 2570.610 kb on + strand, within AO356_11335at 2570.610 kb on + strand, within AO356_11335at 2570.610 kb on + strand, within AO356_11335at 2570.610 kb on + strand, within AO356_11335at 2570.611 kb on - strand, within AO356_11335at 2570.611 kb on - strand, within AO356_11335at 2570.611 kb on - strand, within AO356_11335at 2570.611 kb on - strand, within AO356_11335at 2570.611 kb on - strand, within AO356_11335at 2570.611 kb on - strand, within AO356_11335at 2570.611 kb on - strand, within AO356_11335at 2570.611 kb on - strand, within AO356_11335at 2570.611 kb on - strand, within AO356_11335at 2570.611 kb on - strand, within AO356_11335at 2570.679 kb on - strand, within AO356_11335at 2570.683 kb on + strand, within AO356_11335at 2570.683 kb on + strand, within AO356_11335at 2570.684 kb on - strand, within AO356_11335at 2570.684 kb on - strand, within AO356_11335at 2570.742 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.745 kb on + strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.746 kb on - strand, within AO356_11335at 2570.765 kb on + strand, within AO356_11335at 2570.765 kb on + strand, within AO356_11335at 2570.766 kb on - strand, within AO356_11335at 2570.959 kb on + strandat 2570.959 kb on + strandat 2570.959 kb on + strandat 2570.959 kb on + strandat 2570.960 kb on - strandat 2570.960 kb on - strandat 2570.960 kb on - strandat 2570.960 kb on - strandat 2571.009 kb on + strandat 2571.009 kb on + strandat 2571.010 kb on - strandat 2571.010 kb on - strandat 2571.010 kb on - strandat 2571.010 kb on - strandat 2571.010 kb on - strandat 2571.491 kb on + strand, within AO356_11340at 2571.577 kb on + strandat 2571.577 kb on + strandat 2571.577 kb on + strandat 2571.577 kb on + strandat 2571.577 kb on + strandat 2571.577 kb on + strandat 2571.578 kb on - strandat 2571.578 kb on - strandat 2571.578 kb on - strandat 2571.578 kb on - strandat 2571.578 kb on - strandat 2571.578 kb on - strandat 2571.578 kb on - strandat 2571.578 kb on - strandat 2571.633 kb on + strandat 2571.644 kb on + strandat 2571.644 kb on + strandat 2571.644 kb on + strandat 2571.644 kb on + strandat 2571.644 kb on + strandat 2571.644 kb on + strandat 2571.644 kb on + strandat 2571.644 kb on + strandat 2571.644 kb on + strandat 2571.644 kb on + strandat 2571.644 kb on + strandat 2571.645 kb on - strandat 2571.645 kb on - strandat 2571.645 kb on - strandat 2571.645 kb on - strandat 2571.645 kb on - strandat 2571.645 kb on - strandat 2571.645 kb on - strandat 2571.645 kb on - strandat 2571.645 kb on - strandat 2571.645 kb on - strandat 2571.645 kb on - strandat 2571.697 kb on + strandat 2571.697 kb on + strandat 2571.697 kb on + strandat 2571.698 kb on - strandat 2571.698 kb on - strandat 2571.698 kb on - strandat 2571.698 kb on - strandat 2571.720 kb on + strandat 2571.721 kb on - strandat 2571.735 kb on + strandat 2571.735 kb on + strandat 2571.735 kb on + strandat 2571.735 kb on + strandat 2571.735 kb on + strandat 2571.736 kb on - strand, within AO356_11345at 2571.736 kb on - strand, within AO356_11345at 2571.879 kb on + strand, within AO356_11345at 2571.879 kb on + strand, within AO356_11345at 2571.880 kb on - strand, within AO356_11345at 2571.880 kb on - strand, within AO356_11345at 2571.880 kb on - strand, within AO356_11345at 2571.880 kb on - strand, within AO356_11345at 2571.880 kb on - strand, within AO356_11345at 2571.880 kb on - strand, within AO356_11345at 2572.025 kb on + strandat 2572.025 kb on + strandat 2572.025 kb on + strandat 2572.025 kb on + strandat 2572.205 kb on + strandat 2572.205 kb on + strandat 2572.206 kb on - strandat 2572.214 kb on + strandat 2572.214 kb on + strandat 2572.214 kb on + strandat 2572.284 kb on + strandat 2572.284 kb on + strandat 2572.285 kb on - strandat 2572.285 kb on - strandat 2572.285 kb on - strandat 2572.285 kb on - strandat 2572.285 kb on - strandat 2572.285 kb on - strandat 2572.285 kb on - strandat 2572.319 kb on - strandat 2572.397 kb on - strandat 2572.416 kb on + strandat 2572.416 kb on + strandat 2572.416 kb on + strandat 2572.416 kb on + strandat 2572.417 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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2,569,998 - +0.5
2,570,097 + AO356_11335 0.18 +0.8
2,570,098 - AO356_11335 0.18 +0.2
2,570,098 - AO356_11335 0.18 -0.8
2,570,551 + AO356_11335 0.66 +0.2
2,570,552 - AO356_11335 0.66 +0.5
2,570,610 + AO356_11335 0.72 +0.5
2,570,610 + AO356_11335 0.72 +0.2
2,570,610 + AO356_11335 0.72 -2.0
2,570,610 + AO356_11335 0.72 +0.4
2,570,610 + AO356_11335 0.72 +0.7
2,570,610 + AO356_11335 0.72 +0.7
2,570,610 + AO356_11335 0.72 +0.4
2,570,610 + AO356_11335 0.72 -0.5
2,570,610 + AO356_11335 0.72 -0.4
2,570,610 + AO356_11335 0.72 -0.0
2,570,611 - AO356_11335 0.72 +0.8
2,570,611 - AO356_11335 0.72 +1.0
2,570,611 - AO356_11335 0.72 +0.1
2,570,611 - AO356_11335 0.72 +0.4
2,570,611 - AO356_11335 0.72 -0.4
2,570,611 - AO356_11335 0.72 +1.0
2,570,611 - AO356_11335 0.72 -0.5
2,570,611 - AO356_11335 0.72 +1.6
2,570,611 - AO356_11335 0.72 +0.7
2,570,611 - AO356_11335 0.72 +0.6
2,570,679 - AO356_11335 0.79 +0.6
2,570,683 + AO356_11335 0.80 +0.5
2,570,683 + AO356_11335 0.80 -0.1
2,570,684 - AO356_11335 0.80 +0.4
2,570,684 - AO356_11335 0.80 +0.2
2,570,742 + AO356_11335 0.86 +0.4
2,570,745 + AO356_11335 0.86 -0.7
2,570,745 + AO356_11335 0.86 -0.3
2,570,745 + AO356_11335 0.86 +0.7
2,570,745 + AO356_11335 0.86 +0.7
2,570,745 + AO356_11335 0.86 +0.3
2,570,745 + AO356_11335 0.86 -0.1
2,570,745 + AO356_11335 0.86 +0.8
2,570,745 + AO356_11335 0.86 +0.9
2,570,745 + AO356_11335 0.86 +0.2
2,570,745 + AO356_11335 0.86 -0.4
2,570,745 + AO356_11335 0.86 +0.4
2,570,745 + AO356_11335 0.86 +2.6
2,570,745 + AO356_11335 0.86 -0.2
2,570,745 + AO356_11335 0.86 -1.8
2,570,745 + AO356_11335 0.86 +0.4
2,570,745 + AO356_11335 0.86 +0.1
2,570,746 - AO356_11335 0.87 -0.8
2,570,746 - AO356_11335 0.87 -0.4
2,570,746 - AO356_11335 0.87 +1.0
2,570,746 - AO356_11335 0.87 +1.6
2,570,746 - AO356_11335 0.87 -1.5
2,570,746 - AO356_11335 0.87 -0.3
2,570,746 - AO356_11335 0.87 -1.5
2,570,746 - AO356_11335 0.87 +0.6
2,570,746 - AO356_11335 0.87 +0.8
2,570,746 - AO356_11335 0.87 -1.9
2,570,746 - AO356_11335 0.87 -0.1
2,570,746 - AO356_11335 0.87 +0.4
2,570,765 + AO356_11335 0.89 -0.1
2,570,765 + AO356_11335 0.89 +0.4
2,570,766 - AO356_11335 0.89 -1.4
2,570,959 + -0.6
2,570,959 + -0.4
2,570,959 + -0.6
2,570,959 + +1.2
2,570,960 - -0.2
2,570,960 - -1.3
2,570,960 - -1.3
2,570,960 - +0.1
2,571,009 + +0.6
2,571,009 + -0.9
2,571,010 - -1.0
2,571,010 - +0.4
2,571,010 - +0.4
2,571,010 - -0.2
2,571,010 - -0.1
2,571,491 + AO356_11340 0.81 +0.6
2,571,577 + -0.4
2,571,577 + -0.7
2,571,577 + -0.0
2,571,577 + -1.7
2,571,577 + -1.1
2,571,577 + +1.1
2,571,578 - +0.2
2,571,578 - +1.2
2,571,578 - +1.1
2,571,578 - -1.2
2,571,578 - +0.1
2,571,578 - +1.0
2,571,578 - -0.5
2,571,578 - +0.9
2,571,633 + +2.4
2,571,644 + +0.4
2,571,644 + +0.3
2,571,644 + -0.7
2,571,644 + +1.1
2,571,644 + +1.3
2,571,644 + +0.8
2,571,644 + +0.6
2,571,644 + -0.6
2,571,644 + +0.3
2,571,644 + +1.2
2,571,644 + +0.4
2,571,645 - -2.7
2,571,645 - +0.1
2,571,645 - +0.6
2,571,645 - -0.5
2,571,645 - -0.4
2,571,645 - -0.4
2,571,645 - -0.0
2,571,645 - -1.2
2,571,645 - +0.2
2,571,645 - +0.9
2,571,645 - -0.8
2,571,697 + +0.9
2,571,697 + +1.0
2,571,697 + +1.5
2,571,698 - -1.6
2,571,698 - -0.2
2,571,698 - -0.2
2,571,698 - -0.5
2,571,720 + -0.0
2,571,721 - -0.3
2,571,735 + +0.5
2,571,735 + +0.6
2,571,735 + +0.2
2,571,735 + -0.5
2,571,735 + +0.5
2,571,736 - AO356_11345 0.10 -0.6
2,571,736 - AO356_11345 0.10 +0.0
2,571,879 + AO356_11345 0.52 +0.3
2,571,879 + AO356_11345 0.52 +1.2
2,571,880 - AO356_11345 0.53 -0.1
2,571,880 - AO356_11345 0.53 +0.2
2,571,880 - AO356_11345 0.53 +0.0
2,571,880 - AO356_11345 0.53 +0.0
2,571,880 - AO356_11345 0.53 +0.3
2,571,880 - AO356_11345 0.53 +0.4
2,572,025 + -0.4
2,572,025 + +0.5
2,572,025 + -0.8
2,572,025 + -2.3
2,572,205 + -0.4
2,572,205 + -0.2
2,572,206 - -0.0
2,572,214 + -1.7
2,572,214 + +0.2
2,572,214 + +0.9
2,572,284 + +1.0
2,572,284 + +1.1
2,572,285 - -0.8
2,572,285 - +0.3
2,572,285 - +1.1
2,572,285 - -0.0
2,572,285 - -0.3
2,572,285 - +0.6
2,572,285 - +0.9
2,572,319 - +0.6
2,572,397 - -0.4
2,572,416 + -0.2
2,572,416 + -1.3
2,572,416 + +0.9
2,572,416 + -0.1
2,572,417 - +0.2

Or see this region's nucleotide sequence