Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08755

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08750 and AO356_08755 are separated by 10 nucleotidesAO356_08755 and AO356_08760 overlap by 4 nucleotidesAO356_08760 and AO356_08765 overlap by 1 nucleotides AO356_08750: AO356_08750 - DNA topoisomerase IV, at 1,970,905 to 1,973,169 _08750 AO356_08755: AO356_08755 - aspartyl protease, at 1,973,180 to 1,973,701 _08755 AO356_08760: AO356_08760 - DNA topoisomerase IV, at 1,973,698 to 1,974,684 _08760 AO356_08765: AO356_08765 - DNA topoisomerase IV, at 1,974,684 to 1,976,588 _08765 Position (kb) 1973 1974Strain fitness (log2 ratio) -1 0 1at 1973.546 kb on - strand, within AO356_08755at 1973.568 kb on + strand, within AO356_08755at 1973.569 kb on - strand, within AO356_08755at 1973.569 kb on - strand, within AO356_08755at 1973.569 kb on - strand, within AO356_08755at 1973.943 kb on - strand, within AO356_08760at 1974.213 kb on + strand, within AO356_08760at 1974.213 kb on + strand, within AO356_08760at 1974.213 kb on + strand, within AO356_08760at 1974.213 kb on + strand, within AO356_08760at 1974.214 kb on - strand, within AO356_08760at 1974.214 kb on - strand, within AO356_08760at 1974.316 kb on + strand, within AO356_08760at 1974.316 kb on + strand, within AO356_08760at 1974.316 kb on + strand, within AO356_08760at 1974.316 kb on + strand, within AO356_08760at 1974.316 kb on + strand, within AO356_08760at 1974.316 kb on + strand, within AO356_08760at 1974.316 kb on + strand, within AO356_08760at 1974.317 kb on - strand, within AO356_08760at 1974.317 kb on - strand, within AO356_08760at 1974.317 kb on - strand, within AO356_08760at 1974.317 kb on - strand, within AO356_08760at 1974.317 kb on - strand, within AO356_08760at 1974.317 kb on - strand, within AO356_08760at 1974.317 kb on - strand, within AO356_08760at 1974.320 kb on + strand, within AO356_08760at 1974.320 kb on + strand, within AO356_08760at 1974.320 kb on + strand, within AO356_08760at 1974.320 kb on + strand, within AO356_08760at 1974.321 kb on - strand, within AO356_08760at 1974.321 kb on - strand, within AO356_08760at 1974.321 kb on - strand, within AO356_08760at 1974.500 kb on + strand, within AO356_08760at 1974.500 kb on + strand, within AO356_08760at 1974.501 kb on - strand, within AO356_08760at 1974.501 kb on - strand, within AO356_08760at 1974.637 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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1,973,546 - AO356_08755 0.70 +0.2
1,973,568 + AO356_08755 0.74 -0.5
1,973,569 - AO356_08755 0.75 +1.5
1,973,569 - AO356_08755 0.75 +1.6
1,973,569 - AO356_08755 0.75 +0.3
1,973,943 - AO356_08760 0.25 +0.3
1,974,213 + AO356_08760 0.52 +0.7
1,974,213 + AO356_08760 0.52 -0.5
1,974,213 + AO356_08760 0.52 +0.7
1,974,213 + AO356_08760 0.52 -0.2
1,974,214 - AO356_08760 0.52 -1.6
1,974,214 - AO356_08760 0.52 +0.3
1,974,316 + AO356_08760 0.63 -1.5
1,974,316 + AO356_08760 0.63 +0.5
1,974,316 + AO356_08760 0.63 +0.9
1,974,316 + AO356_08760 0.63 -1.1
1,974,316 + AO356_08760 0.63 -0.2
1,974,316 + AO356_08760 0.63 +0.4
1,974,316 + AO356_08760 0.63 -0.3
1,974,317 - AO356_08760 0.63 +0.7
1,974,317 - AO356_08760 0.63 +0.4
1,974,317 - AO356_08760 0.63 +0.9
1,974,317 - AO356_08760 0.63 +0.2
1,974,317 - AO356_08760 0.63 -0.4
1,974,317 - AO356_08760 0.63 -1.3
1,974,317 - AO356_08760 0.63 +0.6
1,974,320 + AO356_08760 0.63 -1.5
1,974,320 + AO356_08760 0.63 -1.4
1,974,320 + AO356_08760 0.63 +0.0
1,974,320 + AO356_08760 0.63 +0.3
1,974,321 - AO356_08760 0.63 -0.6
1,974,321 - AO356_08760 0.63 -0.6
1,974,321 - AO356_08760 0.63 +0.8
1,974,500 + AO356_08760 0.81 +0.5
1,974,500 + AO356_08760 0.81 +0.2
1,974,501 - AO356_08760 0.81 +0.6
1,974,501 - AO356_08760 0.81 +0.1
1,974,637 + +0.5

Or see this region's nucleotide sequence