Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08210

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08205 and AO356_08210 are separated by 30 nucleotidesAO356_08210 and AO356_08215 are separated by 185 nucleotides AO356_08205: AO356_08205 - ribosomal protein L11 methyltransferase, at 1,839,344 to 1,840,222 _08205 AO356_08210: AO356_08210 - hypothetical protein, at 1,840,253 to 1,841,485 _08210 AO356_08215: AO356_08215 - tRNA-dihydrouridine synthase B, at 1,841,671 to 1,842,678 _08215 Position (kb) 1840 1841 1842Strain fitness (log2 ratio) -2 -1 0 1 2at 1839.282 kb on + strandat 1839.283 kb on - strandat 1839.283 kb on - strandat 1839.283 kb on - strandat 1839.283 kb on - strandat 1839.360 kb on + strandat 1839.360 kb on + strandat 1839.360 kb on + strandat 1839.395 kb on + strandat 1839.395 kb on + strandat 1839.395 kb on + strandat 1839.396 kb on - strandat 1839.417 kb on + strandat 1839.417 kb on + strandat 1839.482 kb on - strand, within AO356_08205at 1839.825 kb on + strand, within AO356_08205at 1839.825 kb on + strand, within AO356_08205at 1839.980 kb on + strand, within AO356_08205at 1839.981 kb on - strand, within AO356_08205at 1839.981 kb on - strand, within AO356_08205at 1840.148 kb on + strandat 1840.220 kb on + strandat 1840.220 kb on + strandat 1840.649 kb on + strand, within AO356_08210at 1840.649 kb on + strand, within AO356_08210at 1840.650 kb on - strand, within AO356_08210at 1841.069 kb on + strand, within AO356_08210at 1841.069 kb on + strand, within AO356_08210at 1841.079 kb on - strand, within AO356_08210at 1841.079 kb on - strand, within AO356_08210at 1841.079 kb on - strand, within AO356_08210at 1841.157 kb on + strand, within AO356_08210at 1841.158 kb on - strand, within AO356_08210at 1841.255 kb on + strand, within AO356_08210at 1841.255 kb on + strand, within AO356_08210at 1841.255 kb on + strand, within AO356_08210at 1841.256 kb on - strand, within AO356_08210at 1841.256 kb on - strand, within AO356_08210at 1841.256 kb on - strand, within AO356_08210at 1841.357 kb on + strand, within AO356_08210at 1841.456 kb on + strandat 1841.456 kb on + strandat 1841.457 kb on - strandat 1841.457 kb on - strandat 1841.562 kb on + strandat 1841.562 kb on + strandat 1841.562 kb on + strandat 1841.563 kb on - strandat 1841.563 kb on - strandat 1841.563 kb on - strandat 1841.670 kb on + strandat 1841.670 kb on + strandat 1841.670 kb on + strandat 1841.670 kb on + strandat 1841.670 kb on + strandat 1841.670 kb on + strandat 1841.695 kb on + strandat 1841.695 kb on + strandat 1841.695 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1841.697 kb on + strandat 1842.208 kb on + strand, within AO356_08215at 1842.226 kb on + strand, within AO356_08215at 1842.397 kb on + strand, within AO356_08215at 1842.397 kb on + strand, within AO356_08215at 1842.397 kb on + strand, within AO356_08215at 1842.397 kb on + strand, within AO356_08215at 1842.450 kb on + strand, within AO356_08215at 1842.476 kb on + strand, within AO356_08215at 1842.476 kb on + strand, within AO356_08215at 1842.476 kb on + strand, within AO356_08215at 1842.476 kb on + strand, within AO356_08215at 1842.476 kb on + strand, within AO356_08215

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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1,839,282 + +0.3
1,839,283 - -0.7
1,839,283 - +0.4
1,839,283 - +0.4
1,839,283 - -0.5
1,839,360 + +1.6
1,839,360 + -1.7
1,839,360 + -1.3
1,839,395 + -0.8
1,839,395 + +0.1
1,839,395 + -0.7
1,839,396 - -0.5
1,839,417 + +0.3
1,839,417 + +0.0
1,839,482 - AO356_08205 0.16 -0.1
1,839,825 + AO356_08205 0.55 -1.6
1,839,825 + AO356_08205 0.55 +0.3
1,839,980 + AO356_08205 0.72 +0.4
1,839,981 - AO356_08205 0.72 -0.3
1,839,981 - AO356_08205 0.72 +0.3
1,840,148 + -2.2
1,840,220 + -0.2
1,840,220 + +0.1
1,840,649 + AO356_08210 0.32 +1.2
1,840,649 + AO356_08210 0.32 -0.8
1,840,650 - AO356_08210 0.32 -1.1
1,841,069 + AO356_08210 0.66 -0.3
1,841,069 + AO356_08210 0.66 -1.0
1,841,079 - AO356_08210 0.67 -1.3
1,841,079 - AO356_08210 0.67 -0.4
1,841,079 - AO356_08210 0.67 -0.6
1,841,157 + AO356_08210 0.73 -1.8
1,841,158 - AO356_08210 0.73 -0.5
1,841,255 + AO356_08210 0.81 +1.1
1,841,255 + AO356_08210 0.81 -0.1
1,841,255 + AO356_08210 0.81 -0.8
1,841,256 - AO356_08210 0.81 -0.9
1,841,256 - AO356_08210 0.81 -1.3
1,841,256 - AO356_08210 0.81 -1.3
1,841,357 + AO356_08210 0.90 -1.0
1,841,456 + +0.1
1,841,456 + -1.3
1,841,457 - -0.9
1,841,457 - +1.2
1,841,562 + +1.8
1,841,562 + -1.2
1,841,562 + -0.1
1,841,563 - +0.4
1,841,563 - -1.5
1,841,563 - -0.7
1,841,670 + -0.6
1,841,670 + -0.9
1,841,670 + -0.3
1,841,670 + +0.6
1,841,670 + -0.5
1,841,670 + +0.0
1,841,695 + +0.2
1,841,695 + -0.8
1,841,695 + +0.2
1,841,697 + -0.7
1,841,697 + -1.5
1,841,697 + -0.5
1,841,697 + +0.7
1,841,697 + -0.4
1,841,697 + -1.0
1,841,697 + -0.5
1,841,697 + +0.2
1,841,697 + +0.8
1,841,697 + +0.8
1,841,697 + -0.4
1,841,697 + -1.5
1,841,697 + +0.2
1,841,697 + -0.6
1,841,697 + -0.3
1,841,697 + -0.5
1,841,697 + +0.2
1,841,697 + +0.1
1,841,697 + +0.5
1,841,697 + -0.9
1,842,208 + AO356_08215 0.53 -0.3
1,842,226 + AO356_08215 0.55 -0.8
1,842,397 + AO356_08215 0.72 +1.5
1,842,397 + AO356_08215 0.72 +0.1
1,842,397 + AO356_08215 0.72 +0.6
1,842,397 + AO356_08215 0.72 +1.0
1,842,450 + AO356_08215 0.77 -0.5
1,842,476 + AO356_08215 0.80 +0.8
1,842,476 + AO356_08215 0.80 +0.7
1,842,476 + AO356_08215 0.80 +0.3
1,842,476 + AO356_08215 0.80 +0.4
1,842,476 + AO356_08215 0.80 -0.1

Or see this region's nucleotide sequence