Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07900 and AO356_07905 overlap by 4 nucleotides AO356_07905 and AO356_07910 are separated by 138 nucleotides AO356_07910 and AO356_07915 overlap by 4 nucleotides
AO356_07900: AO356_07900 - diguanylate cyclase, at 1,763,843 to 1,765,111
_07900
AO356_07905: AO356_07905 - hypothetical protein, at 1,765,108 to 1,765,683
_07905
AO356_07910: AO356_07910 - exodeoxyribonuclease V subunit alpha, at 1,765,822 to 1,767,918
_07910
AO356_07915: AO356_07915 - exodeoxyribonuclease V subunit beta, at 1,767,915 to 1,771,604
_07915
Position (kb) 1765
1766
1767
1768 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1764.933 kb on + strand, within AO356_07900 at 1764.933 kb on + strand, within AO356_07900 at 1764.933 kb on + strand, within AO356_07900 at 1764.934 kb on - strand, within AO356_07900 at 1764.934 kb on - strand, within AO356_07900 at 1764.934 kb on - strand, within AO356_07900 at 1764.934 kb on - strand, within AO356_07900 at 1764.934 kb on - strand, within AO356_07900 at 1764.934 kb on - strand, within AO356_07900 at 1764.934 kb on - strand, within AO356_07900 at 1765.343 kb on + strand, within AO356_07905 at 1765.451 kb on + strand, within AO356_07905 at 1765.451 kb on + strand, within AO356_07905 at 1765.451 kb on + strand, within AO356_07905 at 1765.452 kb on - strand, within AO356_07905 at 1765.452 kb on - strand, within AO356_07905 at 1765.452 kb on - strand, within AO356_07905 at 1765.511 kb on + strand, within AO356_07905 at 1765.512 kb on - strand, within AO356_07905 at 1765.529 kb on - strand, within AO356_07905 at 1765.670 kb on - strand at 1765.707 kb on + strand at 1765.707 kb on + strand at 1765.707 kb on + strand at 1765.707 kb on + strand at 1765.707 kb on + strand at 1765.708 kb on - strand at 1765.708 kb on - strand at 1765.757 kb on + strand at 1765.757 kb on + strand at 1765.757 kb on + strand at 1765.757 kb on + strand at 1765.761 kb on + strand at 1765.761 kb on + strand at 1765.761 kb on + strand at 1765.762 kb on - strand at 1765.762 kb on - strand at 1765.762 kb on - strand at 1765.808 kb on + strand at 1765.809 kb on - strand at 1765.809 kb on - strand at 1765.809 kb on - strand at 1765.954 kb on + strand at 1765.955 kb on - strand at 1766.115 kb on + strand, within AO356_07910 at 1766.793 kb on - strand, within AO356_07910 at 1766.846 kb on - strand, within AO356_07910 at 1767.918 kb on + strand at 1767.918 kb on + strand at 1767.918 kb on + strand at 1767.919 kb on - strand at 1767.919 kb on - strand at 1768.022 kb on - strand at 1768.064 kb on - strand at 1768.142 kb on - strand at 1768.252 kb on + strand at 1768.810 kb on + strand, within AO356_07915 at 1768.810 kb on + strand, within AO356_07915
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 1,764,933 + AO356_07900 0.86 +0.0 1,764,933 + AO356_07900 0.86 +0.5 1,764,933 + AO356_07900 0.86 -1.1 1,764,934 - AO356_07900 0.86 +0.0 1,764,934 - AO356_07900 0.86 -0.9 1,764,934 - AO356_07900 0.86 -0.1 1,764,934 - AO356_07900 0.86 +0.4 1,764,934 - AO356_07900 0.86 +0.8 1,764,934 - AO356_07900 0.86 +0.5 1,764,934 - AO356_07900 0.86 +1.3 1,765,343 + AO356_07905 0.41 +0.0 1,765,451 + AO356_07905 0.60 +0.3 1,765,451 + AO356_07905 0.60 +0.6 1,765,451 + AO356_07905 0.60 +0.2 1,765,452 - AO356_07905 0.60 +0.7 1,765,452 - AO356_07905 0.60 -0.8 1,765,452 - AO356_07905 0.60 -0.6 1,765,511 + AO356_07905 0.70 -0.4 1,765,512 - AO356_07905 0.70 -1.0 1,765,529 - AO356_07905 0.73 -1.9 1,765,670 - +0.0 1,765,707 + -1.2 1,765,707 + -0.1 1,765,707 + -0.4 1,765,707 + +0.5 1,765,707 + -0.2 1,765,708 - +0.2 1,765,708 - +0.7 1,765,757 + +0.2 1,765,757 + -0.1 1,765,757 + +0.8 1,765,757 + +0.1 1,765,761 + +1.0 1,765,761 + -1.2 1,765,761 + +0.4 1,765,762 - -0.8 1,765,762 - -1.1 1,765,762 - -0.6 1,765,808 + +0.1 1,765,809 - -0.4 1,765,809 - -1.7 1,765,809 - -0.8 1,765,954 + +1.0 1,765,955 - -0.3 1,766,115 + AO356_07910 0.14 -0.4 1,766,793 - AO356_07910 0.46 +1.4 1,766,846 - AO356_07910 0.49 -0.6 1,767,918 + +0.0 1,767,918 + +0.7 1,767,918 + +0.1 1,767,919 - +2.0 1,767,919 - -0.6 1,768,022 - +0.7 1,768,064 - -0.4 1,768,142 - -0.1 1,768,252 + +0.2 1,768,810 + AO356_07915 0.24 -0.4 1,768,810 + AO356_07915 0.24 +0.2
Or see this region's nucleotide sequence