Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06525

Experiment: perchlorate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_06520 and AO356_06525 are separated by 79 nucleotidesAO356_06525 and AO356_06530 are separated by 253 nucleotidesAO356_06530 and AO356_06535 are separated by 66 nucleotides AO356_06520: AO356_06520 - GMP synthase, at 1,443,014 to 1,444,591 _06520 AO356_06525: AO356_06525 - inosine-5'-monophosphate dehydrogenase, at 1,444,671 to 1,446,140 _06525 AO356_06530: AO356_06530 - sugar ABC transporter ATPase, at 1,446,394 to 1,446,942 _06530 AO356_06535: AO356_06535 - permease, at 1,447,009 to 1,447,776 _06535 Position (kb) 1444 1445 1446 1447Strain fitness (log2 ratio) -1 0 1 2at 1444.607 kb on - strandat 1444.607 kb on - strandat 1444.607 kb on - strandat 1444.653 kb on - strandat 1446.209 kb on - strandat 1446.209 kb on - strandat 1446.221 kb on - strandat 1446.224 kb on - strandat 1446.224 kb on - strandat 1446.265 kb on + strandat 1446.265 kb on + strandat 1446.266 kb on - strandat 1446.266 kb on - strandat 1446.266 kb on - strandat 1446.266 kb on - strandat 1446.266 kb on - strandat 1446.395 kb on + strandat 1446.395 kb on + strandat 1446.395 kb on + strandat 1446.395 kb on + strandat 1446.395 kb on + strandat 1446.396 kb on - strandat 1446.396 kb on - strandat 1446.396 kb on - strandat 1446.396 kb on - strandat 1446.396 kb on - strandat 1446.690 kb on + strand, within AO356_06530at 1446.690 kb on + strand, within AO356_06530at 1446.691 kb on - strand, within AO356_06530at 1446.691 kb on - strand, within AO356_06530at 1446.692 kb on + strand, within AO356_06530at 1446.692 kb on + strand, within AO356_06530at 1446.692 kb on + strand, within AO356_06530at 1446.692 kb on + strand, within AO356_06530at 1446.692 kb on + strand, within AO356_06530at 1446.692 kb on + strand, within AO356_06530at 1446.693 kb on - strand, within AO356_06530at 1446.693 kb on - strand, within AO356_06530at 1446.693 kb on - strand, within AO356_06530at 1446.693 kb on - strand, within AO356_06530at 1446.693 kb on - strand, within AO356_06530at 1446.693 kb on - strand, within AO356_06530at 1446.693 kb on - strand, within AO356_06530at 1446.693 kb on - strand, within AO356_06530at 1446.989 kb on + strandat 1446.990 kb on - strandat 1446.990 kb on - strandat 1446.990 kb on - strandat 1446.990 kb on - strandat 1446.990 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
remove
1,444,607 - -0.7
1,444,607 - +1.1
1,444,607 - +1.1
1,444,653 - -1.2
1,446,209 - +1.4
1,446,209 - +1.3
1,446,221 - +0.4
1,446,224 - +1.1
1,446,224 - +0.2
1,446,265 + -1.5
1,446,265 + -0.5
1,446,266 - -0.5
1,446,266 - -0.6
1,446,266 - -0.3
1,446,266 - -0.5
1,446,266 - +0.4
1,446,395 + +1.4
1,446,395 + -0.2
1,446,395 + -0.8
1,446,395 + -0.5
1,446,395 + +2.2
1,446,396 - -0.0
1,446,396 - -0.1
1,446,396 - +0.2
1,446,396 - -0.2
1,446,396 - -1.1
1,446,690 + AO356_06530 0.54 +0.8
1,446,690 + AO356_06530 0.54 +0.9
1,446,691 - AO356_06530 0.54 +0.8
1,446,691 - AO356_06530 0.54 -0.0
1,446,692 + AO356_06530 0.54 +1.9
1,446,692 + AO356_06530 0.54 +0.9
1,446,692 + AO356_06530 0.54 -0.1
1,446,692 + AO356_06530 0.54 -0.3
1,446,692 + AO356_06530 0.54 +0.4
1,446,692 + AO356_06530 0.54 +1.2
1,446,693 - AO356_06530 0.54 +1.2
1,446,693 - AO356_06530 0.54 +0.5
1,446,693 - AO356_06530 0.54 +0.0
1,446,693 - AO356_06530 0.54 -0.7
1,446,693 - AO356_06530 0.54 +0.7
1,446,693 - AO356_06530 0.54 +0.7
1,446,693 - AO356_06530 0.54 -1.2
1,446,693 - AO356_06530 0.54 +0.0
1,446,989 + +0.0
1,446,990 - -1.3
1,446,990 - +1.0
1,446,990 - +0.3
1,446,990 - +0.5
1,446,990 - +0.5

Or see this region's nucleotide sequence