Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03415

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03410 and AO356_03415 are separated by 110 nucleotidesAO356_03415 and AO356_03420 are separated by 17 nucleotides AO356_03410: AO356_03410 - acetyltransferase, at 757,923 to 759,773 _03410 AO356_03415: AO356_03415 - oxidoreductase, at 759,884 to 760,834 _03415 AO356_03420: AO356_03420 - UDP-N-acetyl-D-glucosamine dehydrogenase, at 760,852 to 762,165 _03420 Position (kb) 759 760 761Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 758.884 kb on + strand, within AO356_03410at 758.885 kb on - strand, within AO356_03410at 758.920 kb on + strand, within AO356_03410at 758.920 kb on + strand, within AO356_03410at 758.921 kb on - strand, within AO356_03410at 758.921 kb on - strand, within AO356_03410at 758.929 kb on + strand, within AO356_03410at 758.930 kb on - strand, within AO356_03410at 758.936 kb on + strand, within AO356_03410at 758.936 kb on + strand, within AO356_03410at 758.937 kb on - strand, within AO356_03410at 758.937 kb on - strand, within AO356_03410at 758.937 kb on - strand, within AO356_03410at 759.111 kb on + strand, within AO356_03410at 759.112 kb on - strand, within AO356_03410at 759.112 kb on - strand, within AO356_03410at 759.112 kb on - strand, within AO356_03410at 759.123 kb on + strand, within AO356_03410at 759.124 kb on - strand, within AO356_03410at 759.124 kb on - strand, within AO356_03410at 759.124 kb on - strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.209 kb on - strand, within AO356_03410at 759.209 kb on - strand, within AO356_03410at 759.209 kb on - strand, within AO356_03410at 759.209 kb on - strand, within AO356_03410at 759.337 kb on + strand, within AO356_03410at 759.337 kb on + strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.368 kb on + strand, within AO356_03410at 759.369 kb on - strand, within AO356_03410at 759.406 kb on + strand, within AO356_03410at 759.407 kb on - strand, within AO356_03410at 759.407 kb on - strand, within AO356_03410at 759.407 kb on - strand, within AO356_03410at 759.427 kb on + strand, within AO356_03410at 759.427 kb on + strand, within AO356_03410at 759.427 kb on + strand, within AO356_03410at 759.427 kb on + strand, within AO356_03410at 759.428 kb on - strand, within AO356_03410at 759.428 kb on - strand, within AO356_03410at 759.441 kb on - strand, within AO356_03410at 759.542 kb on - strand, within AO356_03410at 759.574 kb on + strand, within AO356_03410at 759.574 kb on + strand, within AO356_03410at 759.574 kb on + strand, within AO356_03410at 759.574 kb on + strand, within AO356_03410at 759.575 kb on - strand, within AO356_03410at 759.575 kb on - strand, within AO356_03410at 759.624 kb on + strandat 759.624 kb on + strandat 759.625 kb on - strandat 759.667 kb on + strandat 759.667 kb on + strandat 759.690 kb on - strandat 759.700 kb on + strandat 759.701 kb on - strandat 759.701 kb on - strandat 759.803 kb on + strandat 760.026 kb on + strand, within AO356_03415at 760.027 kb on - strand, within AO356_03415at 760.027 kb on - strand, within AO356_03415at 760.027 kb on - strand, within AO356_03415at 760.098 kb on + strand, within AO356_03415at 760.099 kb on - strand, within AO356_03415at 760.163 kb on + strand, within AO356_03415at 760.163 kb on + strand, within AO356_03415at 760.163 kb on + strand, within AO356_03415at 760.164 kb on - strand, within AO356_03415at 760.164 kb on - strand, within AO356_03415at 760.164 kb on - strand, within AO356_03415at 760.179 kb on + strand, within AO356_03415at 760.266 kb on + strand, within AO356_03415at 760.267 kb on - strand, within AO356_03415at 760.267 kb on - strand, within AO356_03415at 760.267 kb on - strand, within AO356_03415at 760.292 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.359 kb on + strand, within AO356_03415at 760.359 kb on + strand, within AO356_03415at 760.359 kb on + strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.378 kb on - strand, within AO356_03415at 760.378 kb on - strand, within AO356_03415at 760.590 kb on + strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.615 kb on - strand, within AO356_03415at 760.615 kb on - strand, within AO356_03415at 760.615 kb on - strand, within AO356_03415at 760.740 kb on + strandat 760.757 kb on - strandat 760.799 kb on - strandat 760.799 kb on - strandat 760.864 kb on - strandat 760.886 kb on + strandat 760.937 kb on + strandat 760.937 kb on + strandat 760.937 kb on + strandat 760.938 kb on - strandat 760.980 kb on - strandat 761.136 kb on + strand, within AO356_03420at 761.137 kb on - strand, within AO356_03420at 761.137 kb on - strand, within AO356_03420at 761.137 kb on - strand, within AO356_03420at 761.143 kb on + strand, within AO356_03420at 761.143 kb on + strand, within AO356_03420at 761.143 kb on + strand, within AO356_03420at 761.143 kb on + strand, within AO356_03420at 761.143 kb on + strand, within AO356_03420at 761.144 kb on - strand, within AO356_03420at 761.144 kb on - strand, within AO356_03420at 761.144 kb on - strand, within AO356_03420at 761.156 kb on + strand, within AO356_03420at 761.157 kb on - strand, within AO356_03420at 761.157 kb on - strand, within AO356_03420at 761.240 kb on + strand, within AO356_03420at 761.241 kb on - strand, within AO356_03420at 761.289 kb on + strand, within AO356_03420at 761.290 kb on - strand, within AO356_03420at 761.301 kb on - strand, within AO356_03420at 761.301 kb on - strand, within AO356_03420at 761.301 kb on - strand, within AO356_03420at 761.325 kb on - strand, within AO356_03420at 761.325 kb on - strand, within AO356_03420at 761.372 kb on + strand, within AO356_03420at 761.373 kb on - strand, within AO356_03420at 761.375 kb on + strand, within AO356_03420at 761.376 kb on - strand, within AO356_03420at 761.428 kb on - strand, within AO356_03420at 761.570 kb on + strand, within AO356_03420at 761.570 kb on + strand, within AO356_03420at 761.605 kb on - strand, within AO356_03420at 761.732 kb on - strand, within AO356_03420at 761.828 kb on - strand, within AO356_03420

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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758,884 + AO356_03410 0.52 +0.0
758,885 - AO356_03410 0.52 -1.3
758,920 + AO356_03410 0.54 -1.3
758,920 + AO356_03410 0.54 -1.3
758,921 - AO356_03410 0.54 -1.4
758,921 - AO356_03410 0.54 -0.2
758,929 + AO356_03410 0.54 -2.5
758,930 - AO356_03410 0.54 -1.8
758,936 + AO356_03410 0.55 -1.2
758,936 + AO356_03410 0.55 -0.8
758,937 - AO356_03410 0.55 +0.4
758,937 - AO356_03410 0.55 +0.8
758,937 - AO356_03410 0.55 -0.0
759,111 + AO356_03410 0.64 -2.1
759,112 - AO356_03410 0.64 -0.3
759,112 - AO356_03410 0.64 -0.1
759,112 - AO356_03410 0.64 +0.1
759,123 + AO356_03410 0.65 -0.7
759,124 - AO356_03410 0.65 +0.2
759,124 - AO356_03410 0.65 -0.5
759,124 - AO356_03410 0.65 +1.5
759,208 + AO356_03410 0.69 -0.6
759,208 + AO356_03410 0.69 +0.4
759,208 + AO356_03410 0.69 -0.5
759,208 + AO356_03410 0.69 -0.4
759,208 + AO356_03410 0.69 -0.5
759,208 + AO356_03410 0.69 -1.0
759,208 + AO356_03410 0.69 -0.5
759,209 - AO356_03410 0.69 +0.1
759,209 - AO356_03410 0.69 -0.9
759,209 - AO356_03410 0.69 +0.2
759,209 - AO356_03410 0.69 +0.4
759,337 + AO356_03410 0.76 -1.4
759,337 + AO356_03410 0.76 -0.3
759,338 - AO356_03410 0.76 -0.7
759,338 - AO356_03410 0.76 -0.0
759,338 - AO356_03410 0.76 +0.7
759,338 - AO356_03410 0.76 -0.8
759,338 - AO356_03410 0.76 +0.8
759,338 - AO356_03410 0.76 +0.3
759,338 - AO356_03410 0.76 -0.6
759,368 + AO356_03410 0.78 +0.7
759,369 - AO356_03410 0.78 -0.2
759,406 + AO356_03410 0.80 -1.8
759,407 - AO356_03410 0.80 +0.6
759,407 - AO356_03410 0.80 +0.7
759,407 - AO356_03410 0.80 +2.0
759,427 + AO356_03410 0.81 -0.4
759,427 + AO356_03410 0.81 -0.9
759,427 + AO356_03410 0.81 +0.0
759,427 + AO356_03410 0.81 -1.4
759,428 - AO356_03410 0.81 -0.3
759,428 - AO356_03410 0.81 -0.0
759,441 - AO356_03410 0.82 -0.1
759,542 - AO356_03410 0.87 -0.6
759,574 + AO356_03410 0.89 +0.9
759,574 + AO356_03410 0.89 -1.1
759,574 + AO356_03410 0.89 -0.3
759,574 + AO356_03410 0.89 -1.6
759,575 - AO356_03410 0.89 +0.6
759,575 - AO356_03410 0.89 -0.8
759,624 + -0.8
759,624 + -0.2
759,625 - -0.7
759,667 + -1.3
759,667 + -0.3
759,690 - -0.2
759,700 + +0.4
759,701 - -1.3
759,701 - -1.2
759,803 + -1.0
760,026 + AO356_03415 0.15 -1.2
760,027 - AO356_03415 0.15 -0.4
760,027 - AO356_03415 0.15 -0.5
760,027 - AO356_03415 0.15 -2.2
760,098 + AO356_03415 0.23 -1.2
760,099 - AO356_03415 0.23 -2.0
760,163 + AO356_03415 0.29 -1.6
760,163 + AO356_03415 0.29 +0.2
760,163 + AO356_03415 0.29 -0.9
760,164 - AO356_03415 0.29 +0.4
760,164 - AO356_03415 0.29 +0.2
760,164 - AO356_03415 0.29 -0.9
760,179 + AO356_03415 0.31 -2.1
760,266 + AO356_03415 0.40 -1.6
760,267 - AO356_03415 0.40 -0.6
760,267 - AO356_03415 0.40 +0.0
760,267 - AO356_03415 0.40 -0.3
760,292 + AO356_03415 0.43 -1.8
760,354 + AO356_03415 0.49 -0.9
760,354 + AO356_03415 0.49 +0.8
760,354 + AO356_03415 0.49 -1.2
760,354 + AO356_03415 0.49 -0.2
760,354 + AO356_03415 0.49 -1.1
760,354 + AO356_03415 0.49 -0.1
760,354 + AO356_03415 0.49 -1.0
760,355 - AO356_03415 0.50 +0.1
760,355 - AO356_03415 0.50 -1.6
760,355 - AO356_03415 0.50 -0.8
760,355 - AO356_03415 0.50 -1.8
760,359 + AO356_03415 0.50 +0.2
760,359 + AO356_03415 0.50 -1.8
760,359 + AO356_03415 0.50 +0.7
760,360 - AO356_03415 0.50 -1.1
760,360 - AO356_03415 0.50 +0.2
760,360 - AO356_03415 0.50 -0.3
760,360 - AO356_03415 0.50 -2.7
760,360 - AO356_03415 0.50 -0.3
760,360 - AO356_03415 0.50 +0.0
760,360 - AO356_03415 0.50 -0.9
760,378 - AO356_03415 0.52 -1.1
760,378 - AO356_03415 0.52 -0.6
760,590 + AO356_03415 0.74 -1.1
760,591 - AO356_03415 0.74 -0.9
760,591 - AO356_03415 0.74 +0.2
760,591 - AO356_03415 0.74 +0.5
760,591 - AO356_03415 0.74 -1.2
760,615 - AO356_03415 0.77 -1.5
760,615 - AO356_03415 0.77 +0.6
760,615 - AO356_03415 0.77 +0.2
760,740 + +0.5
760,757 - -2.0
760,799 - -2.3
760,799 - -1.3
760,864 - -1.9
760,886 + -0.9
760,937 + -0.2
760,937 + -1.4
760,937 + +0.8
760,938 - -1.0
760,980 - +0.1
761,136 + AO356_03420 0.22 -0.6
761,137 - AO356_03420 0.22 -1.7
761,137 - AO356_03420 0.22 -3.0
761,137 - AO356_03420 0.22 -0.9
761,143 + AO356_03420 0.22 -0.5
761,143 + AO356_03420 0.22 +0.7
761,143 + AO356_03420 0.22 -1.1
761,143 + AO356_03420 0.22 -0.6
761,143 + AO356_03420 0.22 -0.8
761,144 - AO356_03420 0.22 -1.6
761,144 - AO356_03420 0.22 -0.2
761,144 - AO356_03420 0.22 -1.6
761,156 + AO356_03420 0.23 -1.6
761,157 - AO356_03420 0.23 -1.3
761,157 - AO356_03420 0.23 -1.9
761,240 + AO356_03420 0.30 -0.1
761,241 - AO356_03420 0.30 +0.5
761,289 + AO356_03420 0.33 -1.6
761,290 - AO356_03420 0.33 -3.1
761,301 - AO356_03420 0.34 -2.4
761,301 - AO356_03420 0.34 -2.9
761,301 - AO356_03420 0.34 -1.0
761,325 - AO356_03420 0.36 -1.4
761,325 - AO356_03420 0.36 -2.3
761,372 + AO356_03420 0.40 -1.2
761,373 - AO356_03420 0.40 -1.4
761,375 + AO356_03420 0.40 -1.0
761,376 - AO356_03420 0.40 +0.3
761,428 - AO356_03420 0.44 -1.8
761,570 + AO356_03420 0.55 -1.4
761,570 + AO356_03420 0.55 -1.0
761,605 - AO356_03420 0.57 -1.4
761,732 - AO356_03420 0.67 -0.2
761,828 - AO356_03420 0.74 -2.7

Or see this region's nucleotide sequence