Experiment: perchlorate 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01165 and AO356_01170 overlap by 4 nucleotides AO356_01170 and AO356_01175 overlap by 4 nucleotides
AO356_01165: AO356_01165 - lipopolysaccharide biosynthesis protein, at 266,547 to 268,139
_01165
AO356_01170: AO356_01170 - glycosyl transferase family 1, at 268,136 to 269,239
_01170
AO356_01175: AO356_01175 - polymerase, at 269,236 to 270,606
_01175
Position (kb) 268
269
270 Strain fitness (log2 ratio) -1
0
1 at 267.192 kb on + strand, within AO356_01165 at 267.192 kb on + strand, within AO356_01165 at 267.192 kb on + strand, within AO356_01165 at 267.193 kb on - strand, within AO356_01165 at 267.193 kb on - strand, within AO356_01165 at 267.214 kb on - strand, within AO356_01165 at 267.346 kb on - strand, within AO356_01165 at 267.432 kb on + strand, within AO356_01165 at 267.432 kb on + strand, within AO356_01165 at 267.432 kb on + strand, within AO356_01165 at 267.433 kb on - strand, within AO356_01165 at 267.433 kb on - strand, within AO356_01165 at 267.534 kb on + strand, within AO356_01165 at 267.535 kb on - strand, within AO356_01165 at 267.807 kb on + strand, within AO356_01165 at 267.808 kb on - strand, within AO356_01165 at 267.978 kb on + strand, within AO356_01165 at 267.979 kb on - strand, within AO356_01165 at 267.979 kb on - strand, within AO356_01165 at 268.211 kb on + strand at 268.212 kb on - strand at 268.212 kb on - strand at 268.212 kb on - strand at 268.212 kb on - strand at 268.514 kb on + strand, within AO356_01170 at 268.514 kb on + strand, within AO356_01170 at 268.514 kb on + strand, within AO356_01170 at 268.515 kb on - strand, within AO356_01170 at 268.632 kb on + strand, within AO356_01170 at 268.632 kb on + strand, within AO356_01170 at 269.208 kb on - strand at 269.208 kb on - strand at 269.560 kb on + strand, within AO356_01175 at 269.640 kb on - strand, within AO356_01175 at 269.726 kb on + strand, within AO356_01175 at 269.750 kb on - strand, within AO356_01175 at 269.974 kb on + strand, within AO356_01175 at 269.974 kb on + strand, within AO356_01175 at 269.974 kb on + strand, within AO356_01175 at 269.974 kb on + strand, within AO356_01175 at 269.974 kb on + strand, within AO356_01175 at 269.975 kb on - strand, within AO356_01175 at 269.975 kb on - strand, within AO356_01175 at 270.166 kb on + strand, within AO356_01175 at 270.167 kb on - strand, within AO356_01175 at 270.167 kb on - strand, within AO356_01175
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 75 mM remove 267,192 + AO356_01165 0.40 -1.6 267,192 + AO356_01165 0.40 +0.8 267,192 + AO356_01165 0.40 -0.0 267,193 - AO356_01165 0.41 -0.3 267,193 - AO356_01165 0.41 +0.5 267,214 - AO356_01165 0.42 +0.7 267,346 - AO356_01165 0.50 +0.6 267,432 + AO356_01165 0.56 +0.5 267,432 + AO356_01165 0.56 +1.4 267,432 + AO356_01165 0.56 +0.3 267,433 - AO356_01165 0.56 -0.2 267,433 - AO356_01165 0.56 +1.0 267,534 + AO356_01165 0.62 +0.6 267,535 - AO356_01165 0.62 +1.2 267,807 + AO356_01165 0.79 +0.6 267,808 - AO356_01165 0.79 -0.0 267,978 + AO356_01165 0.90 -0.5 267,979 - AO356_01165 0.90 -1.7 267,979 - AO356_01165 0.90 -0.6 268,211 + -0.1 268,212 - +0.1 268,212 - -0.9 268,212 - +0.6 268,212 - -0.1 268,514 + AO356_01170 0.34 +0.9 268,514 + AO356_01170 0.34 +0.6 268,514 + AO356_01170 0.34 +1.2 268,515 - AO356_01170 0.34 -0.6 268,632 + AO356_01170 0.45 +1.3 268,632 + AO356_01170 0.45 +0.8 269,208 - +0.3 269,208 - +0.5 269,560 + AO356_01175 0.24 -0.1 269,640 - AO356_01175 0.29 +0.9 269,726 + AO356_01175 0.36 +0.3 269,750 - AO356_01175 0.37 +0.9 269,974 + AO356_01175 0.54 +0.2 269,974 + AO356_01175 0.54 -0.2 269,974 + AO356_01175 0.54 +0.3 269,974 + AO356_01175 0.54 +0.7 269,974 + AO356_01175 0.54 +0.1 269,975 - AO356_01175 0.54 +0.4 269,975 - AO356_01175 0.54 -0.2 270,166 + AO356_01175 0.68 +0.3 270,167 - AO356_01175 0.68 -0.6 270,167 - AO356_01175 0.68 -0.1
Or see this region's nucleotide sequence