Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00825

Experiment: perchlorate 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00820 and AO356_00825 are separated by 118 nucleotides AO356_00820: AO356_00820 - alcohol dehydrogenase, at 185,791 to 186,831 _00820 AO356_00825: AO356_00825 - hypothetical protein, at 186,950 to 187,189 _00825 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2at 185.997 kb on + strand, within AO356_00820at 185.997 kb on + strand, within AO356_00820at 185.998 kb on - strand, within AO356_00820at 185.998 kb on - strand, within AO356_00820at 186.075 kb on + strand, within AO356_00820at 186.075 kb on + strand, within AO356_00820at 186.076 kb on - strand, within AO356_00820at 186.099 kb on + strand, within AO356_00820at 186.099 kb on + strand, within AO356_00820at 186.100 kb on - strand, within AO356_00820at 186.144 kb on + strand, within AO356_00820at 186.144 kb on + strand, within AO356_00820at 186.145 kb on - strand, within AO356_00820at 186.470 kb on + strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.721 kb on + strand, within AO356_00820at 186.721 kb on + strand, within AO356_00820at 186.816 kb on - strandat 186.934 kb on + strandat 186.934 kb on + strandat 186.935 kb on - strandat 186.935 kb on - strandat 186.935 kb on - strandat 186.951 kb on + strandat 186.952 kb on - strandat 186.952 kb on - strandat 186.952 kb on - strandat 186.953 kb on + strandat 186.953 kb on + strandat 186.954 kb on - strandat 186.959 kb on - strandat 186.973 kb on - strandat 186.990 kb on - strand, within AO356_00825at 187.025 kb on - strand, within AO356_00825at 187.091 kb on - strand, within AO356_00825at 187.092 kb on + strand, within AO356_00825at 187.093 kb on - strand, within AO356_00825at 187.093 kb on - strand, within AO356_00825at 187.149 kb on - strand, within AO356_00825at 187.149 kb on - strand, within AO356_00825at 187.184 kb on + strandat 187.191 kb on + strandat 187.191 kb on + strandat 187.192 kb on - strandat 187.192 kb on - strandat 187.192 kb on - strandat 187.200 kb on + strandat 187.201 kb on - strandat 187.212 kb on + strandat 187.310 kb on + strandat 187.311 kb on - strandat 187.319 kb on + strandat 187.320 kb on - strandat 187.389 kb on - strandat 187.492 kb on + strandat 187.492 kb on + strandat 187.493 kb on - strandat 187.575 kb on + strandat 187.575 kb on + strandat 187.576 kb on - strandat 187.576 kb on - strandat 187.576 kb on - strandat 187.576 kb on - strandat 187.579 kb on + strandat 187.579 kb on + strandat 187.579 kb on + strandat 187.579 kb on + strandat 187.579 kb on + strandat 187.580 kb on - strandat 187.580 kb on - strandat 187.580 kb on - strandat 187.580 kb on - strandat 187.638 kb on + strandat 187.638 kb on + strandat 187.639 kb on - strandat 187.748 kb on - strandat 187.767 kb on + strandat 187.767 kb on + strandat 187.768 kb on - strandat 187.768 kb on - strandat 187.771 kb on + strandat 187.772 kb on - strandat 187.772 kb on - strandat 187.772 kb on - strandat 187.772 kb on - strandat 187.774 kb on + strandat 187.775 kb on - strandat 187.776 kb on + strandat 187.776 kb on + strandat 187.776 kb on + strandat 187.777 kb on - strandat 187.777 kb on - strandat 187.810 kb on + strandat 187.877 kb on - strandat 187.984 kb on + strandat 187.997 kb on - strandat 188.000 kb on - strandat 188.000 kb on - strandat 188.004 kb on + strandat 188.091 kb on - strandat 188.096 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 75 mM
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185,997 + AO356_00820 0.20 +0.1
185,997 + AO356_00820 0.20 +0.7
185,998 - AO356_00820 0.20 -0.1
185,998 - AO356_00820 0.20 -0.8
186,075 + AO356_00820 0.27 -0.7
186,075 + AO356_00820 0.27 +1.1
186,076 - AO356_00820 0.27 +1.1
186,099 + AO356_00820 0.30 +0.4
186,099 + AO356_00820 0.30 -0.1
186,100 - AO356_00820 0.30 -1.9
186,144 + AO356_00820 0.34 +0.0
186,144 + AO356_00820 0.34 +0.4
186,145 - AO356_00820 0.34 +0.3
186,470 + AO356_00820 0.65 -0.3
186,471 - AO356_00820 0.65 -0.9
186,471 - AO356_00820 0.65 +0.1
186,471 - AO356_00820 0.65 -0.2
186,471 - AO356_00820 0.65 +0.3
186,721 + AO356_00820 0.89 +2.0
186,721 + AO356_00820 0.89 +0.7
186,816 - -1.8
186,934 + +0.1
186,934 + +1.0
186,935 - -0.9
186,935 - -0.5
186,935 - -0.5
186,951 + +0.0
186,952 - +0.3
186,952 - -1.7
186,952 - +0.1
186,953 + -0.8
186,953 + +0.5
186,954 - +1.7
186,959 - +1.1
186,973 - +0.2
186,990 - AO356_00825 0.17 -0.1
187,025 - AO356_00825 0.31 +0.6
187,091 - AO356_00825 0.59 -0.6
187,092 + AO356_00825 0.59 +0.7
187,093 - AO356_00825 0.60 +0.0
187,093 - AO356_00825 0.60 +0.2
187,149 - AO356_00825 0.83 -1.8
187,149 - AO356_00825 0.83 +1.0
187,184 + +1.0
187,191 + +0.6
187,191 + -1.3
187,192 - -1.1
187,192 - -0.0
187,192 - +1.8
187,200 + +0.3
187,201 - -0.2
187,212 + +0.1
187,310 + -0.4
187,311 - -0.1
187,319 + -1.0
187,320 - +0.1
187,389 - +1.1
187,492 + -0.8
187,492 + +0.3
187,493 - -1.1
187,575 + -2.1
187,575 + +0.6
187,576 - -0.0
187,576 - +0.3
187,576 - -0.9
187,576 - -0.5
187,579 + +0.3
187,579 + -0.4
187,579 + +2.0
187,579 + +0.1
187,579 + +0.1
187,580 - +1.1
187,580 - -0.3
187,580 - -0.8
187,580 - +1.0
187,638 + -0.2
187,638 + -0.2
187,639 - +0.5
187,748 - -0.1
187,767 + -0.6
187,767 + +0.3
187,768 - +1.7
187,768 - +0.8
187,771 + -0.7
187,772 - -1.6
187,772 - -0.0
187,772 - +0.2
187,772 - +0.7
187,774 + -0.1
187,775 - -0.3
187,776 + +0.6
187,776 + -0.9
187,776 + -0.7
187,777 - +1.5
187,777 - +0.3
187,810 + +0.1
187,877 - +0.2
187,984 + -2.6
187,997 - -0.8
188,000 - -1.0
188,000 - -1.1
188,004 + -0.6
188,091 - +0.4
188,096 + +0.9

Or see this region's nucleotide sequence