Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22095

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22090 and ABZR87_RS22095 are separated by 10 nucleotidesABZR87_RS22095 and ABZR87_RS22100 overlap by 16 nucleotides ABZR87_RS22090: ABZR87_RS22090 - glycosyltransferase family 2 protein, at 1,324,796 to 1,325,905 _RS22090 ABZR87_RS22095: ABZR87_RS22095 - glucose-1-phosphate cytidylyltransferase, at 1,325,916 to 1,326,689 _RS22095 ABZR87_RS22100: ABZR87_RS22100 - CDP-glucose 4,6-dehydratase, at 1,326,674 to 1,327,780 _RS22100 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1325.237 kb on + strand, within ABZR87_RS22090at 1325.237 kb on + strand, within ABZR87_RS22090at 1325.237 kb on + strand, within ABZR87_RS22090at 1325.237 kb on + strand, within ABZR87_RS22090at 1325.238 kb on - strand, within ABZR87_RS22090at 1325.238 kb on - strand, within ABZR87_RS22090at 1325.238 kb on - strand, within ABZR87_RS22090at 1325.316 kb on - strand, within ABZR87_RS22090at 1325.400 kb on - strand, within ABZR87_RS22090at 1325.408 kb on + strand, within ABZR87_RS22090at 1325.408 kb on + strand, within ABZR87_RS22090at 1325.409 kb on - strand, within ABZR87_RS22090at 1325.409 kb on - strand, within ABZR87_RS22090at 1325.409 kb on - strand, within ABZR87_RS22090at 1325.409 kb on - strand, within ABZR87_RS22090at 1325.409 kb on - strand, within ABZR87_RS22090at 1325.465 kb on + strand, within ABZR87_RS22090at 1325.465 kb on + strand, within ABZR87_RS22090at 1325.466 kb on - strand, within ABZR87_RS22090at 1325.466 kb on - strand, within ABZR87_RS22090at 1325.466 kb on - strand, within ABZR87_RS22090at 1325.466 kb on - strand, within ABZR87_RS22090at 1325.468 kb on + strand, within ABZR87_RS22090at 1325.469 kb on - strand, within ABZR87_RS22090at 1325.469 kb on - strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.525 kb on - strand, within ABZR87_RS22090at 1325.525 kb on - strand, within ABZR87_RS22090at 1325.525 kb on - strand, within ABZR87_RS22090at 1325.525 kb on - strand, within ABZR87_RS22090at 1325.525 kb on - strand, within ABZR87_RS22090at 1325.621 kb on + strand, within ABZR87_RS22090at 1325.621 kb on + strand, within ABZR87_RS22090at 1325.621 kb on + strand, within ABZR87_RS22090at 1325.627 kb on + strand, within ABZR87_RS22090at 1325.627 kb on + strand, within ABZR87_RS22090at 1325.627 kb on + strand, within ABZR87_RS22090at 1325.627 kb on + strand, within ABZR87_RS22090at 1325.627 kb on + strand, within ABZR87_RS22090at 1325.628 kb on - strand, within ABZR87_RS22090at 1325.795 kb on + strandat 1325.795 kb on + strandat 1325.796 kb on - strandat 1325.796 kb on - strandat 1325.810 kb on + strandat 1325.907 kb on + strandat 1326.036 kb on + strand, within ABZR87_RS22095at 1326.036 kb on + strand, within ABZR87_RS22095at 1326.037 kb on - strand, within ABZR87_RS22095at 1326.037 kb on - strand, within ABZR87_RS22095at 1326.037 kb on - strand, within ABZR87_RS22095at 1326.078 kb on + strand, within ABZR87_RS22095at 1326.079 kb on - strand, within ABZR87_RS22095at 1326.079 kb on - strand, within ABZR87_RS22095at 1326.087 kb on + strand, within ABZR87_RS22095at 1326.087 kb on + strand, within ABZR87_RS22095at 1326.088 kb on - strand, within ABZR87_RS22095at 1326.088 kb on - strand, within ABZR87_RS22095at 1326.102 kb on + strand, within ABZR87_RS22095at 1326.102 kb on + strand, within ABZR87_RS22095at 1326.102 kb on + strand, within ABZR87_RS22095at 1326.103 kb on - strand, within ABZR87_RS22095at 1326.103 kb on - strand, within ABZR87_RS22095at 1326.103 kb on - strand, within ABZR87_RS22095at 1326.114 kb on + strand, within ABZR87_RS22095at 1326.114 kb on + strand, within ABZR87_RS22095at 1326.115 kb on - strand, within ABZR87_RS22095at 1326.115 kb on - strand, within ABZR87_RS22095at 1326.115 kb on - strand, within ABZR87_RS22095at 1326.146 kb on + strand, within ABZR87_RS22095at 1326.146 kb on + strand, within ABZR87_RS22095at 1326.147 kb on - strand, within ABZR87_RS22095at 1326.261 kb on + strand, within ABZR87_RS22095at 1326.262 kb on - strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.514 kb on - strand, within ABZR87_RS22095at 1326.514 kb on - strand, within ABZR87_RS22095at 1326.514 kb on - strand, within ABZR87_RS22095at 1326.804 kb on - strand, within ABZR87_RS22100at 1326.838 kb on + strand, within ABZR87_RS22100at 1326.838 kb on + strand, within ABZR87_RS22100at 1326.980 kb on + strand, within ABZR87_RS22100at 1326.981 kb on - strand, within ABZR87_RS22100at 1326.981 kb on - strand, within ABZR87_RS22100at 1327.001 kb on + strand, within ABZR87_RS22100at 1327.001 kb on + strand, within ABZR87_RS22100at 1327.001 kb on + strand, within ABZR87_RS22100at 1327.001 kb on + strand, within ABZR87_RS22100at 1327.002 kb on - strand, within ABZR87_RS22100at 1327.098 kb on - strand, within ABZR87_RS22100at 1327.160 kb on + strand, within ABZR87_RS22100at 1327.160 kb on + strand, within ABZR87_RS22100at 1327.161 kb on - strand, within ABZR87_RS22100at 1327.161 kb on - strand, within ABZR87_RS22100at 1327.294 kb on + strand, within ABZR87_RS22100at 1327.295 kb on - strand, within ABZR87_RS22100at 1327.295 kb on - strand, within ABZR87_RS22100at 1327.397 kb on + strand, within ABZR87_RS22100at 1327.398 kb on - strand, within ABZR87_RS22100at 1327.398 kb on - strand, within ABZR87_RS22100at 1327.673 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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1,325,237 + ABZR87_RS22090 0.40 +1.2
1,325,237 + ABZR87_RS22090 0.40 +0.5
1,325,237 + ABZR87_RS22090 0.40 -1.0
1,325,237 + ABZR87_RS22090 0.40 +0.7
1,325,238 - ABZR87_RS22090 0.40 +1.9
1,325,238 - ABZR87_RS22090 0.40 +1.0
1,325,238 - ABZR87_RS22090 0.40 -1.0
1,325,316 - ABZR87_RS22090 0.47 +0.7
1,325,400 - ABZR87_RS22090 0.54 -0.0
1,325,408 + ABZR87_RS22090 0.55 +3.2
1,325,408 + ABZR87_RS22090 0.55 +1.1
1,325,409 - ABZR87_RS22090 0.55 +1.5
1,325,409 - ABZR87_RS22090 0.55 -2.7
1,325,409 - ABZR87_RS22090 0.55 +0.4
1,325,409 - ABZR87_RS22090 0.55 +0.6
1,325,409 - ABZR87_RS22090 0.55 +1.5
1,325,465 + ABZR87_RS22090 0.60 +1.8
1,325,465 + ABZR87_RS22090 0.60 +0.4
1,325,466 - ABZR87_RS22090 0.60 +0.4
1,325,466 - ABZR87_RS22090 0.60 +1.7
1,325,466 - ABZR87_RS22090 0.60 -0.2
1,325,466 - ABZR87_RS22090 0.60 +0.6
1,325,468 + ABZR87_RS22090 0.61 +1.3
1,325,469 - ABZR87_RS22090 0.61 +1.1
1,325,469 - ABZR87_RS22090 0.61 +1.3
1,325,524 + ABZR87_RS22090 0.66 +0.9
1,325,524 + ABZR87_RS22090 0.66 -0.2
1,325,524 + ABZR87_RS22090 0.66 +2.1
1,325,524 + ABZR87_RS22090 0.66 +1.0
1,325,524 + ABZR87_RS22090 0.66 +0.3
1,325,524 + ABZR87_RS22090 0.66 +0.9
1,325,525 - ABZR87_RS22090 0.66 +2.6
1,325,525 - ABZR87_RS22090 0.66 +1.1
1,325,525 - ABZR87_RS22090 0.66 -0.5
1,325,525 - ABZR87_RS22090 0.66 -4.1
1,325,525 - ABZR87_RS22090 0.66 +1.3
1,325,621 + ABZR87_RS22090 0.74 +0.8
1,325,621 + ABZR87_RS22090 0.74 -0.2
1,325,621 + ABZR87_RS22090 0.74 +0.9
1,325,627 + ABZR87_RS22090 0.75 -2.4
1,325,627 + ABZR87_RS22090 0.75 -0.8
1,325,627 + ABZR87_RS22090 0.75 +2.0
1,325,627 + ABZR87_RS22090 0.75 +1.6
1,325,627 + ABZR87_RS22090 0.75 +1.3
1,325,628 - ABZR87_RS22090 0.75 -3.1
1,325,795 + -1.2
1,325,795 + +0.8
1,325,796 - +2.1
1,325,796 - -0.2
1,325,810 + +0.8
1,325,907 + -0.0
1,326,036 + ABZR87_RS22095 0.16 +1.3
1,326,036 + ABZR87_RS22095 0.16 +1.6
1,326,037 - ABZR87_RS22095 0.16 +0.8
1,326,037 - ABZR87_RS22095 0.16 +1.5
1,326,037 - ABZR87_RS22095 0.16 +0.6
1,326,078 + ABZR87_RS22095 0.21 -1.3
1,326,079 - ABZR87_RS22095 0.21 -0.7
1,326,079 - ABZR87_RS22095 0.21 -0.7
1,326,087 + ABZR87_RS22095 0.22 -2.8
1,326,087 + ABZR87_RS22095 0.22 +0.4
1,326,088 - ABZR87_RS22095 0.22 +1.0
1,326,088 - ABZR87_RS22095 0.22 -3.2
1,326,102 + ABZR87_RS22095 0.24 +0.7
1,326,102 + ABZR87_RS22095 0.24 +0.0
1,326,102 + ABZR87_RS22095 0.24 +2.0
1,326,103 - ABZR87_RS22095 0.24 -2.4
1,326,103 - ABZR87_RS22095 0.24 -3.2
1,326,103 - ABZR87_RS22095 0.24 +1.3
1,326,114 + ABZR87_RS22095 0.26 -1.7
1,326,114 + ABZR87_RS22095 0.26 -0.8
1,326,115 - ABZR87_RS22095 0.26 +1.7
1,326,115 - ABZR87_RS22095 0.26 -0.9
1,326,115 - ABZR87_RS22095 0.26 -1.0
1,326,146 + ABZR87_RS22095 0.30 -0.2
1,326,146 + ABZR87_RS22095 0.30 -3.7
1,326,147 - ABZR87_RS22095 0.30 -0.7
1,326,261 + ABZR87_RS22095 0.45 -1.2
1,326,262 - ABZR87_RS22095 0.45 +1.0
1,326,513 + ABZR87_RS22095 0.77 -0.2
1,326,513 + ABZR87_RS22095 0.77 -1.7
1,326,513 + ABZR87_RS22095 0.77 -3.3
1,326,513 + ABZR87_RS22095 0.77 -3.7
1,326,513 + ABZR87_RS22095 0.77 -0.9
1,326,513 + ABZR87_RS22095 0.77 -1.5
1,326,514 - ABZR87_RS22095 0.77 -0.6
1,326,514 - ABZR87_RS22095 0.77 -0.1
1,326,514 - ABZR87_RS22095 0.77 +0.3
1,326,804 - ABZR87_RS22100 0.12 -0.2
1,326,838 + ABZR87_RS22100 0.15 -2.4
1,326,838 + ABZR87_RS22100 0.15 +0.8
1,326,980 + ABZR87_RS22100 0.28 +1.3
1,326,981 - ABZR87_RS22100 0.28 -0.2
1,326,981 - ABZR87_RS22100 0.28 +0.8
1,327,001 + ABZR87_RS22100 0.30 +0.2
1,327,001 + ABZR87_RS22100 0.30 -0.7
1,327,001 + ABZR87_RS22100 0.30 -0.6
1,327,001 + ABZR87_RS22100 0.30 +0.6
1,327,002 - ABZR87_RS22100 0.30 +1.6
1,327,098 - ABZR87_RS22100 0.38 +1.5
1,327,160 + ABZR87_RS22100 0.44 +0.5
1,327,160 + ABZR87_RS22100 0.44 +0.0
1,327,161 - ABZR87_RS22100 0.44 -1.3
1,327,161 - ABZR87_RS22100 0.44 +0.3
1,327,294 + ABZR87_RS22100 0.56 +0.3
1,327,295 - ABZR87_RS22100 0.56 +0.7
1,327,295 - ABZR87_RS22100 0.56 +0.6
1,327,397 + ABZR87_RS22100 0.65 +0.6
1,327,398 - ABZR87_RS22100 0.65 +1.1
1,327,398 - ABZR87_RS22100 0.65 -1.3
1,327,673 + -3.1

Or see this region's nucleotide sequence