Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21630

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21625 and ABZR87_RS21630 are separated by 53 nucleotidesABZR87_RS21630 and ABZR87_RS21635 overlap by 11 nucleotidesABZR87_RS21635 and ABZR87_RS21640 are separated by 3 nucleotides ABZR87_RS21625: ABZR87_RS21625 - GGDEF domain-containing protein, at 1,232,339 to 1,233,439 _RS21625 ABZR87_RS21630: ABZR87_RS21630 - mechanosensitive ion channel family protein, at 1,233,493 to 1,234,626 _RS21630 ABZR87_RS21635: ABZR87_RS21635 - hypothetical protein, at 1,234,616 to 1,235,497 _RS21635 ABZR87_RS21640: ABZR87_RS21640 - DUF2334 domain-containing protein, at 1,235,501 to 1,237,219 _RS21640 Position (kb) 1233 1234 1235Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1232.681 kb on + strand, within ABZR87_RS21625at 1232.681 kb on + strand, within ABZR87_RS21625at 1232.681 kb on + strand, within ABZR87_RS21625at 1232.681 kb on + strand, within ABZR87_RS21625at 1232.681 kb on + strand, within ABZR87_RS21625at 1232.681 kb on + strand, within ABZR87_RS21625at 1232.681 kb on + strand, within ABZR87_RS21625at 1232.682 kb on - strand, within ABZR87_RS21625at 1232.682 kb on - strand, within ABZR87_RS21625at 1232.682 kb on - strand, within ABZR87_RS21625at 1232.834 kb on + strand, within ABZR87_RS21625at 1232.835 kb on - strand, within ABZR87_RS21625at 1232.877 kb on - strand, within ABZR87_RS21625at 1233.042 kb on - strand, within ABZR87_RS21625at 1233.076 kb on + strand, within ABZR87_RS21625at 1233.076 kb on + strand, within ABZR87_RS21625at 1233.077 kb on - strand, within ABZR87_RS21625at 1233.077 kb on - strand, within ABZR87_RS21625at 1233.077 kb on - strand, within ABZR87_RS21625at 1233.077 kb on - strand, within ABZR87_RS21625at 1233.077 kb on - strand, within ABZR87_RS21625at 1233.400 kb on - strandat 1233.451 kb on + strandat 1233.451 kb on + strandat 1233.451 kb on + strandat 1233.451 kb on + strandat 1233.451 kb on + strandat 1233.452 kb on - strandat 1233.452 kb on - strandat 1233.452 kb on - strandat 1233.553 kb on - strandat 1233.553 kb on - strandat 1233.553 kb on - strandat 1233.575 kb on - strandat 1233.575 kb on - strandat 1233.575 kb on - strandat 1233.681 kb on + strand, within ABZR87_RS21630at 1233.681 kb on + strand, within ABZR87_RS21630at 1233.727 kb on + strand, within ABZR87_RS21630at 1233.727 kb on + strand, within ABZR87_RS21630at 1233.728 kb on - strand, within ABZR87_RS21630at 1233.962 kb on + strand, within ABZR87_RS21630at 1234.270 kb on + strand, within ABZR87_RS21630at 1234.270 kb on + strand, within ABZR87_RS21630at 1234.270 kb on + strand, within ABZR87_RS21630at 1234.270 kb on + strand, within ABZR87_RS21630at 1234.435 kb on + strand, within ABZR87_RS21630at 1234.435 kb on + strand, within ABZR87_RS21630at 1234.435 kb on + strand, within ABZR87_RS21630at 1234.435 kb on + strand, within ABZR87_RS21630at 1234.435 kb on + strand, within ABZR87_RS21630at 1234.568 kb on + strandat 1234.569 kb on - strandat 1234.569 kb on - strandat 1234.569 kb on - strandat 1234.617 kb on + strandat 1234.714 kb on - strand, within ABZR87_RS21635at 1234.714 kb on - strand, within ABZR87_RS21635at 1234.714 kb on - strand, within ABZR87_RS21635at 1234.753 kb on - strand, within ABZR87_RS21635at 1234.755 kb on + strand, within ABZR87_RS21635at 1234.756 kb on - strand, within ABZR87_RS21635at 1234.853 kb on + strand, within ABZR87_RS21635at 1234.853 kb on + strand, within ABZR87_RS21635at 1234.897 kb on - strand, within ABZR87_RS21635at 1234.897 kb on - strand, within ABZR87_RS21635at 1234.897 kb on - strand, within ABZR87_RS21635at 1234.915 kb on - strand, within ABZR87_RS21635at 1235.004 kb on + strand, within ABZR87_RS21635at 1235.005 kb on - strand, within ABZR87_RS21635at 1235.007 kb on + strand, within ABZR87_RS21635at 1235.007 kb on + strand, within ABZR87_RS21635at 1235.007 kb on + strand, within ABZR87_RS21635at 1235.052 kb on + strand, within ABZR87_RS21635at 1235.053 kb on - strand, within ABZR87_RS21635at 1235.160 kb on + strand, within ABZR87_RS21635at 1235.196 kb on + strand, within ABZR87_RS21635at 1235.196 kb on + strand, within ABZR87_RS21635at 1235.196 kb on + strand, within ABZR87_RS21635at 1235.197 kb on - strand, within ABZR87_RS21635at 1235.197 kb on - strand, within ABZR87_RS21635at 1235.238 kb on + strand, within ABZR87_RS21635at 1235.274 kb on + strand, within ABZR87_RS21635at 1235.274 kb on + strand, within ABZR87_RS21635at 1235.274 kb on + strand, within ABZR87_RS21635at 1235.391 kb on + strand, within ABZR87_RS21635at 1235.530 kb on + strandat 1235.530 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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1,232,681 + ABZR87_RS21625 0.31 -1.5
1,232,681 + ABZR87_RS21625 0.31 -0.4
1,232,681 + ABZR87_RS21625 0.31 -2.8
1,232,681 + ABZR87_RS21625 0.31 -3.7
1,232,681 + ABZR87_RS21625 0.31 +0.3
1,232,681 + ABZR87_RS21625 0.31 -0.9
1,232,681 + ABZR87_RS21625 0.31 -0.2
1,232,682 - ABZR87_RS21625 0.31 +0.2
1,232,682 - ABZR87_RS21625 0.31 +0.6
1,232,682 - ABZR87_RS21625 0.31 +0.7
1,232,834 + ABZR87_RS21625 0.45 +1.2
1,232,835 - ABZR87_RS21625 0.45 -1.5
1,232,877 - ABZR87_RS21625 0.49 +1.1
1,233,042 - ABZR87_RS21625 0.64 -3.8
1,233,076 + ABZR87_RS21625 0.67 -2.1
1,233,076 + ABZR87_RS21625 0.67 -3.6
1,233,077 - ABZR87_RS21625 0.67 +0.2
1,233,077 - ABZR87_RS21625 0.67 -1.1
1,233,077 - ABZR87_RS21625 0.67 -0.7
1,233,077 - ABZR87_RS21625 0.67 -1.2
1,233,077 - ABZR87_RS21625 0.67 +0.4
1,233,400 - -3.6
1,233,451 + +0.8
1,233,451 + -0.5
1,233,451 + -4.0
1,233,451 + -0.6
1,233,451 + -0.3
1,233,452 - -3.1
1,233,452 - -0.2
1,233,452 - +0.0
1,233,553 - -1.7
1,233,553 - -2.8
1,233,553 - -2.2
1,233,575 - +0.7
1,233,575 - +0.6
1,233,575 - +1.0
1,233,681 + ABZR87_RS21630 0.17 +1.0
1,233,681 + ABZR87_RS21630 0.17 -0.9
1,233,727 + ABZR87_RS21630 0.21 -0.2
1,233,727 + ABZR87_RS21630 0.21 +2.3
1,233,728 - ABZR87_RS21630 0.21 +2.5
1,233,962 + ABZR87_RS21630 0.41 -0.3
1,234,270 + ABZR87_RS21630 0.69 +1.5
1,234,270 + ABZR87_RS21630 0.69 +0.3
1,234,270 + ABZR87_RS21630 0.69 -1.4
1,234,270 + ABZR87_RS21630 0.69 -2.1
1,234,435 + ABZR87_RS21630 0.83 -1.3
1,234,435 + ABZR87_RS21630 0.83 +1.9
1,234,435 + ABZR87_RS21630 0.83 -2.4
1,234,435 + ABZR87_RS21630 0.83 -2.6
1,234,435 + ABZR87_RS21630 0.83 -4.4
1,234,568 + -1.9
1,234,569 - -0.6
1,234,569 - -0.1
1,234,569 - +1.0
1,234,617 + +0.3
1,234,714 - ABZR87_RS21635 0.11 -2.1
1,234,714 - ABZR87_RS21635 0.11 -1.0
1,234,714 - ABZR87_RS21635 0.11 +0.4
1,234,753 - ABZR87_RS21635 0.16 +1.4
1,234,755 + ABZR87_RS21635 0.16 -2.9
1,234,756 - ABZR87_RS21635 0.16 -2.4
1,234,853 + ABZR87_RS21635 0.27 -2.3
1,234,853 + ABZR87_RS21635 0.27 +0.2
1,234,897 - ABZR87_RS21635 0.32 -3.4
1,234,897 - ABZR87_RS21635 0.32 -0.1
1,234,897 - ABZR87_RS21635 0.32 +0.6
1,234,915 - ABZR87_RS21635 0.34 +0.6
1,235,004 + ABZR87_RS21635 0.44 +1.8
1,235,005 - ABZR87_RS21635 0.44 -0.2
1,235,007 + ABZR87_RS21635 0.44 -0.4
1,235,007 + ABZR87_RS21635 0.44 -0.2
1,235,007 + ABZR87_RS21635 0.44 -0.8
1,235,052 + ABZR87_RS21635 0.49 -0.0
1,235,053 - ABZR87_RS21635 0.50 -0.5
1,235,160 + ABZR87_RS21635 0.62 -0.9
1,235,196 + ABZR87_RS21635 0.66 +1.6
1,235,196 + ABZR87_RS21635 0.66 +1.7
1,235,196 + ABZR87_RS21635 0.66 +0.6
1,235,197 - ABZR87_RS21635 0.66 -2.8
1,235,197 - ABZR87_RS21635 0.66 +1.4
1,235,238 + ABZR87_RS21635 0.71 +1.0
1,235,274 + ABZR87_RS21635 0.75 -1.9
1,235,274 + ABZR87_RS21635 0.75 +2.0
1,235,274 + ABZR87_RS21635 0.75 +0.2
1,235,391 + ABZR87_RS21635 0.88 +1.8
1,235,530 + +0.5
1,235,530 + -3.2

Or see this region's nucleotide sequence