Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20170

Experiment: soil EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20165 and ABZR87_RS20170 are separated by 5 nucleotidesABZR87_RS20170 and ABZR87_RS20175 are separated by 38 nucleotidesABZR87_RS20175 and ABZR87_RS20180 are separated by 170 nucleotides ABZR87_RS20165: ABZR87_RS20165 - TIGR04222 domain-containing membrane protein, at 907,630 to 909,072 _RS20165 ABZR87_RS20170: ABZR87_RS20170 - type VI secretion system protein TssA, at 909,078 to 910,154 _RS20170 ABZR87_RS20175: ABZR87_RS20175 - hypothetical protein, at 910,193 to 910,600 _RS20175 ABZR87_RS20180: ABZR87_RS20180 - DUF6708 domain-containing protein, at 910,771 to 911,268 _RS20180 Position (kb) 909 910 911Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 908.081 kb on + strand, within ABZR87_RS20165at 908.082 kb on - strand, within ABZR87_RS20165at 908.082 kb on - strand, within ABZR87_RS20165at 908.152 kb on + strand, within ABZR87_RS20165at 908.153 kb on - strand, within ABZR87_RS20165at 908.153 kb on - strand, within ABZR87_RS20165at 908.179 kb on + strand, within ABZR87_RS20165at 908.179 kb on + strand, within ABZR87_RS20165at 908.180 kb on - strand, within ABZR87_RS20165at 908.237 kb on - strand, within ABZR87_RS20165at 908.237 kb on - strand, within ABZR87_RS20165at 908.237 kb on - strand, within ABZR87_RS20165at 908.237 kb on - strand, within ABZR87_RS20165at 908.416 kb on + strand, within ABZR87_RS20165at 908.416 kb on + strand, within ABZR87_RS20165at 908.416 kb on + strand, within ABZR87_RS20165at 908.416 kb on + strand, within ABZR87_RS20165at 908.416 kb on + strand, within ABZR87_RS20165at 908.416 kb on + strand, within ABZR87_RS20165at 908.417 kb on - strand, within ABZR87_RS20165at 908.417 kb on - strand, within ABZR87_RS20165at 908.417 kb on - strand, within ABZR87_RS20165at 908.417 kb on - strand, within ABZR87_RS20165at 908.417 kb on - strand, within ABZR87_RS20165at 908.417 kb on - strand, within ABZR87_RS20165at 908.417 kb on - strand, within ABZR87_RS20165at 908.417 kb on - strand, within ABZR87_RS20165at 908.731 kb on + strand, within ABZR87_RS20165at 908.732 kb on - strand, within ABZR87_RS20165at 908.732 kb on - strand, within ABZR87_RS20165at 908.809 kb on + strand, within ABZR87_RS20165at 909.031 kb on - strandat 909.031 kb on - strandat 909.071 kb on - strandat 909.217 kb on + strand, within ABZR87_RS20170at 909.217 kb on + strand, within ABZR87_RS20170at 909.218 kb on - strand, within ABZR87_RS20170at 909.218 kb on - strand, within ABZR87_RS20170at 909.218 kb on - strand, within ABZR87_RS20170at 909.559 kb on + strand, within ABZR87_RS20170at 909.559 kb on + strand, within ABZR87_RS20170at 909.559 kb on + strand, within ABZR87_RS20170at 909.559 kb on + strand, within ABZR87_RS20170at 909.700 kb on + strand, within ABZR87_RS20170at 909.720 kb on + strand, within ABZR87_RS20170at 909.720 kb on + strand, within ABZR87_RS20170at 909.720 kb on + strand, within ABZR87_RS20170at 909.721 kb on - strand, within ABZR87_RS20170at 909.721 kb on - strand, within ABZR87_RS20170at 909.818 kb on - strand, within ABZR87_RS20170at 910.287 kb on + strand, within ABZR87_RS20175at 910.287 kb on + strand, within ABZR87_RS20175at 910.288 kb on - strand, within ABZR87_RS20175at 910.449 kb on + strand, within ABZR87_RS20175at 910.449 kb on + strand, within ABZR87_RS20175at 910.450 kb on - strand, within ABZR87_RS20175at 910.450 kb on - strand, within ABZR87_RS20175at 910.450 kb on - strand, within ABZR87_RS20175at 910.483 kb on - strand, within ABZR87_RS20175at 910.504 kb on - strand, within ABZR87_RS20175at 910.600 kb on + strandat 910.601 kb on - strandat 910.601 kb on - strandat 910.654 kb on + strandat 910.655 kb on - strandat 910.655 kb on - strandat 910.655 kb on - strandat 910.655 kb on - strandat 910.655 kb on - strandat 910.688 kb on + strandat 910.850 kb on + strand, within ABZR87_RS20180at 910.861 kb on - strand, within ABZR87_RS20180at 910.932 kb on + strand, within ABZR87_RS20180at 910.932 kb on + strand, within ABZR87_RS20180at 910.933 kb on - strand, within ABZR87_RS20180at 910.979 kb on + strand, within ABZR87_RS20180at 910.979 kb on + strand, within ABZR87_RS20180at 910.979 kb on + strand, within ABZR87_RS20180at 910.979 kb on + strand, within ABZR87_RS20180at 910.980 kb on - strand, within ABZR87_RS20180at 911.011 kb on - strand, within ABZR87_RS20180at 911.073 kb on + strand, within ABZR87_RS20180at 911.075 kb on + strand, within ABZR87_RS20180at 911.075 kb on + strand, within ABZR87_RS20180at 911.075 kb on + strand, within ABZR87_RS20180at 911.075 kb on + strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.076 kb on - strand, within ABZR87_RS20180at 911.151 kb on + strand, within ABZR87_RS20180at 911.151 kb on + strand, within ABZR87_RS20180

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
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908,081 + ABZR87_RS20165 0.31 -0.6
908,082 - ABZR87_RS20165 0.31 -3.7
908,082 - ABZR87_RS20165 0.31 -0.6
908,152 + ABZR87_RS20165 0.36 -0.4
908,153 - ABZR87_RS20165 0.36 -3.1
908,153 - ABZR87_RS20165 0.36 -1.8
908,179 + ABZR87_RS20165 0.38 -0.8
908,179 + ABZR87_RS20165 0.38 -3.1
908,180 - ABZR87_RS20165 0.38 +1.6
908,237 - ABZR87_RS20165 0.42 +0.5
908,237 - ABZR87_RS20165 0.42 +1.0
908,237 - ABZR87_RS20165 0.42 -2.5
908,237 - ABZR87_RS20165 0.42 -1.8
908,416 + ABZR87_RS20165 0.54 -2.1
908,416 + ABZR87_RS20165 0.54 +0.1
908,416 + ABZR87_RS20165 0.54 -1.7
908,416 + ABZR87_RS20165 0.54 -3.2
908,416 + ABZR87_RS20165 0.54 -2.2
908,416 + ABZR87_RS20165 0.54 +1.4
908,417 - ABZR87_RS20165 0.55 -2.3
908,417 - ABZR87_RS20165 0.55 +2.5
908,417 - ABZR87_RS20165 0.55 -1.6
908,417 - ABZR87_RS20165 0.55 +0.1
908,417 - ABZR87_RS20165 0.55 +3.1
908,417 - ABZR87_RS20165 0.55 -2.8
908,417 - ABZR87_RS20165 0.55 -1.2
908,417 - ABZR87_RS20165 0.55 +0.5
908,731 + ABZR87_RS20165 0.76 -0.2
908,732 - ABZR87_RS20165 0.76 -3.2
908,732 - ABZR87_RS20165 0.76 -2.4
908,809 + ABZR87_RS20165 0.82 +1.6
909,031 - +0.1
909,031 - +0.8
909,071 - +1.1
909,217 + ABZR87_RS20170 0.13 +1.7
909,217 + ABZR87_RS20170 0.13 -1.4
909,218 - ABZR87_RS20170 0.13 +0.2
909,218 - ABZR87_RS20170 0.13 -1.8
909,218 - ABZR87_RS20170 0.13 -2.9
909,559 + ABZR87_RS20170 0.45 +0.1
909,559 + ABZR87_RS20170 0.45 -3.5
909,559 + ABZR87_RS20170 0.45 +1.5
909,559 + ABZR87_RS20170 0.45 +0.6
909,700 + ABZR87_RS20170 0.58 -3.3
909,720 + ABZR87_RS20170 0.60 -1.1
909,720 + ABZR87_RS20170 0.60 -0.9
909,720 + ABZR87_RS20170 0.60 +1.7
909,721 - ABZR87_RS20170 0.60 +0.4
909,721 - ABZR87_RS20170 0.60 -3.4
909,818 - ABZR87_RS20170 0.69 +1.1
910,287 + ABZR87_RS20175 0.23 -1.7
910,287 + ABZR87_RS20175 0.23 +0.2
910,288 - ABZR87_RS20175 0.23 -2.9
910,449 + ABZR87_RS20175 0.63 +1.0
910,449 + ABZR87_RS20175 0.63 +1.3
910,450 - ABZR87_RS20175 0.63 +0.7
910,450 - ABZR87_RS20175 0.63 -2.2
910,450 - ABZR87_RS20175 0.63 +1.7
910,483 - ABZR87_RS20175 0.71 -2.3
910,504 - ABZR87_RS20175 0.76 -0.3
910,600 + +0.9
910,601 - +1.1
910,601 - -1.5
910,654 + -1.7
910,655 - -1.2
910,655 - +3.0
910,655 - +1.8
910,655 - +1.1
910,655 - -0.2
910,688 + -1.3
910,850 + ABZR87_RS20180 0.16 -0.1
910,861 - ABZR87_RS20180 0.18 +2.8
910,932 + ABZR87_RS20180 0.32 -0.7
910,932 + ABZR87_RS20180 0.32 +1.7
910,933 - ABZR87_RS20180 0.33 -2.6
910,979 + ABZR87_RS20180 0.42 -1.8
910,979 + ABZR87_RS20180 0.42 +0.6
910,979 + ABZR87_RS20180 0.42 +1.0
910,979 + ABZR87_RS20180 0.42 -1.7
910,980 - ABZR87_RS20180 0.42 -1.5
911,011 - ABZR87_RS20180 0.48 -0.3
911,073 + ABZR87_RS20180 0.61 -0.4
911,075 + ABZR87_RS20180 0.61 +1.2
911,075 + ABZR87_RS20180 0.61 -0.5
911,075 + ABZR87_RS20180 0.61 -1.1
911,075 + ABZR87_RS20180 0.61 -0.4
911,076 - ABZR87_RS20180 0.61 +0.4
911,076 - ABZR87_RS20180 0.61 -3.2
911,076 - ABZR87_RS20180 0.61 +0.8
911,076 - ABZR87_RS20180 0.61 +2.3
911,076 - ABZR87_RS20180 0.61 -0.6
911,076 - ABZR87_RS20180 0.61 -0.0
911,076 - ABZR87_RS20180 0.61 +0.0
911,076 - ABZR87_RS20180 0.61 -2.1
911,151 + ABZR87_RS20180 0.76 +1.0
911,151 + ABZR87_RS20180 0.76 -2.8

Or see this region's nucleotide sequence