Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19995

Experiment: soil EcoFAB sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS19990 and ABZR87_RS19995 are separated by 17 nucleotidesABZR87_RS19995 and ABZR87_RS20000 are separated by 235 nucleotides ABZR87_RS19990: ABZR87_RS19990 - MBL fold metallo-hydrolase, at 862,660 to 864,024 _RS19990 ABZR87_RS19995: ABZR87_RS19995 - Hsp20/alpha crystallin family protein, at 864,042 to 864,464 _RS19995 ABZR87_RS20000: ABZR87_RS20000 - bifunctional aminoglycoside phosphotransferase/ATP-binding protein, at 864,700 to 866,247 _RS20000 Position (kb) 864 865Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 863.154 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.220 kb on - strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.270 kb on + strand, within ABZR87_RS19990at 863.270 kb on + strand, within ABZR87_RS19990at 863.286 kb on + strand, within ABZR87_RS19990at 863.287 kb on - strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.400 kb on - strand, within ABZR87_RS19990at 863.400 kb on - strand, within ABZR87_RS19990at 863.601 kb on - strand, within ABZR87_RS19990at 863.623 kb on + strand, within ABZR87_RS19990at 863.624 kb on - strand, within ABZR87_RS19990at 863.624 kb on - strand, within ABZR87_RS19990at 863.652 kb on - strand, within ABZR87_RS19990at 863.699 kb on + strand, within ABZR87_RS19990at 863.700 kb on - strand, within ABZR87_RS19990at 863.700 kb on - strand, within ABZR87_RS19990at 863.778 kb on - strand, within ABZR87_RS19990at 863.778 kb on - strand, within ABZR87_RS19990at 863.778 kb on - strand, within ABZR87_RS19990at 863.835 kb on + strand, within ABZR87_RS19990at 863.851 kb on + strand, within ABZR87_RS19990at 863.851 kb on + strand, within ABZR87_RS19990at 863.852 kb on - strand, within ABZR87_RS19990at 863.852 kb on - strand, within ABZR87_RS19990at 863.919 kb on - strandat 863.919 kb on - strandat 863.919 kb on - strandat 863.975 kb on + strandat 863.975 kb on + strandat 863.976 kb on - strandat 863.976 kb on - strandat 863.976 kb on - strandat 864.115 kb on + strand, within ABZR87_RS19995at 864.115 kb on + strand, within ABZR87_RS19995at 864.115 kb on + strand, within ABZR87_RS19995at 864.115 kb on + strand, within ABZR87_RS19995at 864.184 kb on + strand, within ABZR87_RS19995at 864.325 kb on + strand, within ABZR87_RS19995at 864.326 kb on - strand, within ABZR87_RS19995at 864.445 kb on + strandat 864.446 kb on - strandat 864.446 kb on - strandat 864.446 kb on - strandat 864.493 kb on - strandat 864.493 kb on - strandat 864.634 kb on + strandat 864.634 kb on + strandat 864.635 kb on - strandat 864.665 kb on + strandat 864.666 kb on - strandat 864.666 kb on - strandat 864.699 kb on + strandat 864.700 kb on - strandat 864.717 kb on + strandat 864.718 kb on - strandat 864.718 kb on - strandat 864.718 kb on - strandat 864.853 kb on + strandat 864.853 kb on + strandat 864.853 kb on + strandat 864.854 kb on - strandat 864.965 kb on + strand, within ABZR87_RS20000at 864.965 kb on + strand, within ABZR87_RS20000at 864.966 kb on - strand, within ABZR87_RS20000at 864.966 kb on - strand, within ABZR87_RS20000at 864.966 kb on - strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 865.045 kb on + strand, within ABZR87_RS20000at 865.045 kb on + strand, within ABZR87_RS20000at 865.082 kb on + strand, within ABZR87_RS20000at 865.082 kb on + strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.083 kb on - strand, within ABZR87_RS20000at 865.289 kb on + strand, within ABZR87_RS20000

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB
remove
863,154 + ABZR87_RS19990 0.36 -2.0
863,219 + ABZR87_RS19990 0.41 +0.2
863,219 + ABZR87_RS19990 0.41 +0.4
863,219 + ABZR87_RS19990 0.41 +0.7
863,219 + ABZR87_RS19990 0.41 -1.4
863,219 + ABZR87_RS19990 0.41 +1.8
863,220 - ABZR87_RS19990 0.41 +0.0
863,261 + ABZR87_RS19990 0.44 +0.9
863,261 + ABZR87_RS19990 0.44 -0.8
863,261 + ABZR87_RS19990 0.44 +1.2
863,261 + ABZR87_RS19990 0.44 -1.6
863,262 - ABZR87_RS19990 0.44 +1.6
863,262 - ABZR87_RS19990 0.44 -3.6
863,262 - ABZR87_RS19990 0.44 +1.2
863,262 - ABZR87_RS19990 0.44 +1.8
863,262 - ABZR87_RS19990 0.44 -1.0
863,270 + ABZR87_RS19990 0.45 +0.3
863,270 + ABZR87_RS19990 0.45 +1.7
863,286 + ABZR87_RS19990 0.46 -2.9
863,287 - ABZR87_RS19990 0.46 -0.4
863,399 + ABZR87_RS19990 0.54 +0.7
863,399 + ABZR87_RS19990 0.54 -0.5
863,399 + ABZR87_RS19990 0.54 -1.6
863,399 + ABZR87_RS19990 0.54 +0.3
863,400 - ABZR87_RS19990 0.54 +0.2
863,400 - ABZR87_RS19990 0.54 +1.6
863,601 - ABZR87_RS19990 0.69 +0.3
863,623 + ABZR87_RS19990 0.71 +0.6
863,624 - ABZR87_RS19990 0.71 +0.9
863,624 - ABZR87_RS19990 0.71 +0.7
863,652 - ABZR87_RS19990 0.73 -0.6
863,699 + ABZR87_RS19990 0.76 +1.3
863,700 - ABZR87_RS19990 0.76 -2.6
863,700 - ABZR87_RS19990 0.76 -0.2
863,778 - ABZR87_RS19990 0.82 +1.9
863,778 - ABZR87_RS19990 0.82 -0.6
863,778 - ABZR87_RS19990 0.82 -3.1
863,835 + ABZR87_RS19990 0.86 -0.7
863,851 + ABZR87_RS19990 0.87 -1.8
863,851 + ABZR87_RS19990 0.87 +1.3
863,852 - ABZR87_RS19990 0.87 -3.1
863,852 - ABZR87_RS19990 0.87 +0.1
863,919 - +0.3
863,919 - +0.5
863,919 - +1.2
863,975 + +1.3
863,975 + -4.0
863,976 - -0.6
863,976 - -1.9
863,976 - +2.4
864,115 + ABZR87_RS19995 0.17 +1.1
864,115 + ABZR87_RS19995 0.17 +1.4
864,115 + ABZR87_RS19995 0.17 -0.6
864,115 + ABZR87_RS19995 0.17 +1.7
864,184 + ABZR87_RS19995 0.34 -2.4
864,325 + ABZR87_RS19995 0.67 +0.9
864,326 - ABZR87_RS19995 0.67 -3.2
864,445 + +1.6
864,446 - +0.4
864,446 - +0.3
864,446 - -0.2
864,493 - -1.8
864,493 - +1.2
864,634 + +0.8
864,634 + +0.5
864,635 - -3.3
864,665 + -4.0
864,666 - +3.6
864,666 - -1.0
864,699 + -1.1
864,700 - -3.4
864,717 + +0.3
864,718 - +1.0
864,718 - +1.0
864,718 - -0.9
864,853 + -1.2
864,853 + -3.1
864,853 + +0.1
864,854 - +0.3
864,965 + ABZR87_RS20000 0.17 -2.3
864,965 + ABZR87_RS20000 0.17 -1.4
864,966 - ABZR87_RS20000 0.17 -1.8
864,966 - ABZR87_RS20000 0.17 -3.2
864,966 - ABZR87_RS20000 0.17 +1.5
864,967 + ABZR87_RS20000 0.17 -1.9
864,967 + ABZR87_RS20000 0.17 +0.8
864,967 + ABZR87_RS20000 0.17 +2.2
864,967 + ABZR87_RS20000 0.17 +0.9
864,967 + ABZR87_RS20000 0.17 -1.2
864,967 + ABZR87_RS20000 0.17 -2.5
864,967 + ABZR87_RS20000 0.17 +1.1
864,968 - ABZR87_RS20000 0.17 -3.8
864,968 - ABZR87_RS20000 0.17 -1.9
864,968 - ABZR87_RS20000 0.17 +0.3
864,968 - ABZR87_RS20000 0.17 -1.5
864,968 - ABZR87_RS20000 0.17 -4.0
865,045 + ABZR87_RS20000 0.22 -3.5
865,045 + ABZR87_RS20000 0.22 -0.3
865,082 + ABZR87_RS20000 0.25 -0.5
865,082 + ABZR87_RS20000 0.25 +5.1
865,083 - ABZR87_RS20000 0.25 +1.0
865,083 - ABZR87_RS20000 0.25 -1.7
865,083 - ABZR87_RS20000 0.25 -0.4
865,083 - ABZR87_RS20000 0.25 -2.4
865,083 - ABZR87_RS20000 0.25 -3.3
865,083 - ABZR87_RS20000 0.25 +1.7
865,289 + ABZR87_RS20000 0.38 +0.1

Or see this region's nucleotide sequence