Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19920 and ABZR87_RS19925 overlap by 4 nucleotides ABZR87_RS19925 and ABZR87_RS19930 are separated by 51 nucleotides ABZR87_RS19930 and ABZR87_RS19935 are separated by 126 nucleotides ABZR87_RS19935 and ABZR87_RS19940 are separated by 262 nucleotides
ABZR87_RS19920: ABZR87_RS19920 - hypothetical protein, at 846,367 to 846,948
_RS19920
ABZR87_RS19925: ABZR87_RS19925 - hypothetical protein, at 846,945 to 847,631
_RS19925
ABZR87_RS19930: ABZR87_RS19930 - PAS domain-containing sensor histidine kinase, at 847,683 to 849,251
_RS19930
ABZR87_RS19935: ABZR87_RS19935 - hypothetical protein, at 849,378 to 849,728
_RS19935
ABZR87_RS19940: ABZR87_RS19940 - hypothetical protein, at 849,991 to 850,635
_RS19940
Position (kb) 847
848
849
850 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 846.697 kb on + strand, within ABZR87_RS19920 at 846.698 kb on - strand, within ABZR87_RS19920 at 846.785 kb on + strand, within ABZR87_RS19920 at 846.785 kb on + strand, within ABZR87_RS19920 at 846.847 kb on + strand, within ABZR87_RS19920 at 846.847 kb on + strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.909 kb on + strand at 846.909 kb on + strand at 846.909 kb on + strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.925 kb on - strand at 846.972 kb on + strand at 846.972 kb on + strand at 846.973 kb on - strand at 847.266 kb on + strand, within ABZR87_RS19925 at 847.266 kb on + strand, within ABZR87_RS19925 at 847.272 kb on + strand, within ABZR87_RS19925 at 847.272 kb on + strand, within ABZR87_RS19925 at 847.273 kb on - strand, within ABZR87_RS19925 at 847.301 kb on + strand, within ABZR87_RS19925 at 847.302 kb on - strand, within ABZR87_RS19925 at 847.302 kb on - strand, within ABZR87_RS19925 at 847.375 kb on + strand, within ABZR87_RS19925 at 847.375 kb on + strand, within ABZR87_RS19925 at 847.376 kb on - strand, within ABZR87_RS19925 at 847.384 kb on - strand, within ABZR87_RS19925 at 847.394 kb on + strand, within ABZR87_RS19925 at 847.394 kb on + strand, within ABZR87_RS19925 at 847.460 kb on + strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.551 kb on + strand, within ABZR87_RS19925 at 847.552 kb on - strand, within ABZR87_RS19925 at 847.584 kb on + strand at 847.585 kb on - strand at 847.585 kb on - strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.638 kb on + strand at 847.639 kb on - strand at 847.695 kb on + strand at 847.695 kb on + strand at 847.696 kb on - strand at 848.024 kb on + strand, within ABZR87_RS19930 at 848.024 kb on + strand, within ABZR87_RS19930 at 848.080 kb on + strand, within ABZR87_RS19930 at 848.081 kb on - strand, within ABZR87_RS19930 at 848.081 kb on - strand, within ABZR87_RS19930 at 848.680 kb on + strand, within ABZR87_RS19930 at 848.680 kb on + strand, within ABZR87_RS19930 at 848.680 kb on + strand, within ABZR87_RS19930 at 848.681 kb on - strand, within ABZR87_RS19930 at 848.695 kb on + strand, within ABZR87_RS19930 at 848.696 kb on - strand, within ABZR87_RS19930 at 848.696 kb on - strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.755 kb on + strand, within ABZR87_RS19930 at 848.755 kb on + strand, within ABZR87_RS19930 at 848.756 kb on - strand, within ABZR87_RS19930 at 848.851 kb on + strand, within ABZR87_RS19930 at 848.851 kb on + strand, within ABZR87_RS19930 at 848.851 kb on + strand, within ABZR87_RS19930 at 848.852 kb on - strand, within ABZR87_RS19930 at 848.852 kb on - strand, within ABZR87_RS19930 at 848.951 kb on + strand, within ABZR87_RS19930 at 849.167 kb on + strand at 849.168 kb on - strand at 849.206 kb on + strand at 849.206 kb on + strand at 849.206 kb on + strand at 849.206 kb on + strand at 849.207 kb on - strand at 849.207 kb on - strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.228 kb on + strand at 849.228 kb on + strand at 849.229 kb on - strand at 849.232 kb on - strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.326 kb on + strand at 849.327 kb on - strand at 849.511 kb on + strand, within ABZR87_RS19935 at 849.511 kb on + strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.521 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.753 kb on - strand at 849.753 kb on - strand at 849.753 kb on - strand at 849.803 kb on - strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.891 kb on + strand at 849.895 kb on + strand at 849.895 kb on + strand at 849.899 kb on + strand at 849.917 kb on - strand at 849.929 kb on + strand at 849.929 kb on + strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.941 kb on + strand at 849.941 kb on + strand at 850.106 kb on + strand, within ABZR87_RS19940 at 850.117 kb on - strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.156 kb on - strand, within ABZR87_RS19940 at 850.156 kb on - strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.191 kb on - strand, within ABZR87_RS19940 at 850.191 kb on - strand, within ABZR87_RS19940 at 850.229 kb on + strand, within ABZR87_RS19940 at 850.229 kb on + strand, within ABZR87_RS19940 at 850.230 kb on - strand, within ABZR87_RS19940 at 850.230 kb on - strand, within ABZR87_RS19940
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 846,697 + ABZR87_RS19920 0.57 +5.0 846,698 - ABZR87_RS19920 0.57 -0.3 846,785 + ABZR87_RS19920 0.72 -2.8 846,785 + ABZR87_RS19920 0.72 -0.5 846,847 + ABZR87_RS19920 0.82 -2.4 846,847 + ABZR87_RS19920 0.82 +1.9 846,848 - ABZR87_RS19920 0.83 -3.0 846,848 - ABZR87_RS19920 0.83 +0.7 846,848 - ABZR87_RS19920 0.83 +1.9 846,848 - ABZR87_RS19920 0.83 -0.4 846,909 + -0.6 846,909 + +0.0 846,909 + -1.9 846,910 - +0.3 846,910 - +0.8 846,910 - -3.6 846,910 - +0.7 846,913 + -0.1 846,913 + +0.4 846,913 + +1.7 846,913 + -1.3 846,913 + +0.0 846,914 - +1.1 846,914 - -0.3 846,914 - +0.9 846,914 - +0.2 846,925 - +0.7 846,972 + -0.8 846,972 + +1.3 846,973 - +0.8 847,266 + ABZR87_RS19925 0.47 -3.0 847,266 + ABZR87_RS19925 0.47 -0.2 847,272 + ABZR87_RS19925 0.48 -0.7 847,272 + ABZR87_RS19925 0.48 -0.8 847,273 - ABZR87_RS19925 0.48 -1.4 847,301 + ABZR87_RS19925 0.52 -2.3 847,302 - ABZR87_RS19925 0.52 +0.3 847,302 - ABZR87_RS19925 0.52 +1.0 847,375 + ABZR87_RS19925 0.63 +1.7 847,375 + ABZR87_RS19925 0.63 -1.9 847,376 - ABZR87_RS19925 0.63 -0.6 847,384 - ABZR87_RS19925 0.64 -0.3 847,394 + ABZR87_RS19925 0.65 -3.8 847,394 + ABZR87_RS19925 0.65 +1.5 847,460 + ABZR87_RS19925 0.75 +0.4 847,461 - ABZR87_RS19925 0.75 -1.5 847,461 - ABZR87_RS19925 0.75 -3.2 847,461 - ABZR87_RS19925 0.75 +5.5 847,461 - ABZR87_RS19925 0.75 -1.8 847,551 + ABZR87_RS19925 0.88 -0.1 847,552 - ABZR87_RS19925 0.88 +0.8 847,584 + -3.7 847,585 - +0.0 847,585 - +0.6 847,611 + -1.4 847,611 + +2.7 847,611 + +1.1 847,611 + +1.6 847,611 + +0.2 847,611 + -0.4 847,611 + +1.2 847,611 + -0.9 847,611 + +3.4 847,612 - -0.5 847,612 - -1.0 847,612 - -1.6 847,612 - -1.9 847,612 - -1.4 847,612 - -1.2 847,612 - +1.1 847,612 - -0.9 847,612 - +0.9 847,612 - +1.8 847,612 - +0.6 847,612 - -0.5 847,612 - -2.8 847,612 - +2.7 847,638 + -0.2 847,639 - -2.5 847,695 + -0.4 847,695 + -1.7 847,696 - +0.6 848,024 + ABZR87_RS19930 0.22 -0.7 848,024 + ABZR87_RS19930 0.22 -1.7 848,080 + ABZR87_RS19930 0.25 -1.6 848,081 - ABZR87_RS19930 0.25 -2.1 848,081 - ABZR87_RS19930 0.25 +0.1 848,680 + ABZR87_RS19930 0.64 -0.3 848,680 + ABZR87_RS19930 0.64 -0.2 848,680 + ABZR87_RS19930 0.64 -1.9 848,681 - ABZR87_RS19930 0.64 +1.1 848,695 + ABZR87_RS19930 0.64 +2.2 848,696 - ABZR87_RS19930 0.65 -0.5 848,696 - ABZR87_RS19930 0.65 +1.1 848,723 + ABZR87_RS19930 0.66 -0.0 848,723 + ABZR87_RS19930 0.66 -3.7 848,723 + ABZR87_RS19930 0.66 +0.1 848,723 + ABZR87_RS19930 0.66 +0.6 848,724 - ABZR87_RS19930 0.66 -1.5 848,724 - ABZR87_RS19930 0.66 -3.8 848,724 - ABZR87_RS19930 0.66 -0.1 848,724 - ABZR87_RS19930 0.66 -0.8 848,755 + ABZR87_RS19930 0.68 -2.0 848,755 + ABZR87_RS19930 0.68 -0.7 848,756 - ABZR87_RS19930 0.68 +1.3 848,851 + ABZR87_RS19930 0.74 +0.1 848,851 + ABZR87_RS19930 0.74 -1.2 848,851 + ABZR87_RS19930 0.74 +0.5 848,852 - ABZR87_RS19930 0.75 -2.7 848,852 - ABZR87_RS19930 0.75 +0.5 848,951 + ABZR87_RS19930 0.81 +0.5 849,167 + -1.2 849,168 - -2.7 849,206 + +0.8 849,206 + -1.9 849,206 + +1.1 849,206 + -2.9 849,207 - -1.0 849,207 - -0.8 849,208 + +0.2 849,208 + -3.1 849,208 + -0.9 849,208 + +2.4 849,208 + -2.5 849,208 + +1.7 849,208 + +3.5 849,208 + -2.1 849,208 + +0.5 849,209 - +0.1 849,209 - -2.7 849,209 - -3.2 849,209 - -1.5 849,209 - +1.1 849,228 + +1.3 849,228 + -1.0 849,229 - +0.5 849,232 - +2.5 849,297 + +1.0 849,297 + -1.0 849,297 + -1.9 849,297 + +1.0 849,297 + -1.5 849,298 - -0.8 849,298 - +0.6 849,298 - +0.2 849,298 - -2.4 849,298 - -0.1 849,298 - -3.1 849,298 - +1.4 849,326 + -0.2 849,327 - -1.1 849,511 + ABZR87_RS19935 0.38 +1.8 849,511 + ABZR87_RS19935 0.38 +1.9 849,512 - ABZR87_RS19935 0.38 -2.4 849,512 - ABZR87_RS19935 0.38 +0.8 849,512 - ABZR87_RS19935 0.38 +0.8 849,512 - ABZR87_RS19935 0.38 +1.3 849,512 - ABZR87_RS19935 0.38 -3.7 849,521 - ABZR87_RS19935 0.41 -2.0 849,566 - ABZR87_RS19935 0.54 +0.4 849,566 - ABZR87_RS19935 0.54 -0.0 849,566 - ABZR87_RS19935 0.54 +1.9 849,566 - ABZR87_RS19935 0.54 +0.7 849,752 + -0.9 849,752 + +0.1 849,752 + +0.1 849,752 + -2.3 849,752 + +0.6 849,752 + +0.7 849,752 + -1.5 849,752 + +0.9 849,752 + +1.6 849,752 + +1.0 849,752 + -0.1 849,753 - -1.1 849,753 - +0.7 849,753 - -0.0 849,803 - -1.7 849,870 + +0.7 849,870 + +0.8 849,870 + -2.1 849,870 + -0.9 849,871 - +0.2 849,871 - -0.9 849,871 - -1.0 849,871 - +0.5 849,891 + -3.7 849,895 + +4.4 849,895 + +0.2 849,899 + +2.4 849,917 - +0.5 849,929 + +0.6 849,929 + -0.6 849,930 - +1.5 849,930 - +2.1 849,930 - +2.8 849,930 - +1.2 849,941 + +0.0 849,941 + +0.3 850,106 + ABZR87_RS19940 0.18 -1.4 850,117 - ABZR87_RS19940 0.20 +1.3 850,145 + ABZR87_RS19940 0.24 -0.9 850,145 + ABZR87_RS19940 0.24 +0.0 850,145 + ABZR87_RS19940 0.24 +1.2 850,146 - ABZR87_RS19940 0.24 +1.3 850,146 - ABZR87_RS19940 0.24 +2.1 850,146 - ABZR87_RS19940 0.24 -0.2 850,156 - ABZR87_RS19940 0.26 -3.2 850,156 - ABZR87_RS19940 0.26 +2.1 850,157 + ABZR87_RS19940 0.26 -0.6 850,157 + ABZR87_RS19940 0.26 +1.2 850,157 + ABZR87_RS19940 0.26 +0.4 850,157 + ABZR87_RS19940 0.26 +0.7 850,157 + ABZR87_RS19940 0.26 -2.1 850,157 + ABZR87_RS19940 0.26 +0.2 850,157 + ABZR87_RS19940 0.26 +0.2 850,157 + ABZR87_RS19940 0.26 +0.3 850,158 - ABZR87_RS19940 0.26 +1.2 850,158 - ABZR87_RS19940 0.26 -2.3 850,158 - ABZR87_RS19940 0.26 -3.5 850,158 - ABZR87_RS19940 0.26 -0.7 850,158 - ABZR87_RS19940 0.26 -3.8 850,158 - ABZR87_RS19940 0.26 -1.2 850,158 - ABZR87_RS19940 0.26 +0.7 850,191 - ABZR87_RS19940 0.31 -1.5 850,191 - ABZR87_RS19940 0.31 -1.5 850,229 + ABZR87_RS19940 0.37 +1.2 850,229 + ABZR87_RS19940 0.37 +2.5 850,230 - ABZR87_RS19940 0.37 -1.0 850,230 - ABZR87_RS19940 0.37 +2.0
Or see this region's nucleotide sequence