Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19855 and ABZR87_RS19860 are separated by 14 nucleotides ABZR87_RS19860 and ABZR87_RS19865 are separated by 189 nucleotides ABZR87_RS19865 and ABZR87_RS19870 overlap by 4 nucleotides
ABZR87_RS19855: ABZR87_RS19855 - ATP-dependent RNA helicase DbpA, at 828,633 to 830,030
_RS19855
ABZR87_RS19860: ABZR87_RS19860 - hypothetical protein, at 830,045 to 830,230
_RS19860
ABZR87_RS19865: ABZR87_RS19865 - c-type cytochrome, at 830,420 to 831,271
_RS19865
ABZR87_RS19870: ABZR87_RS19870 - GMC family oxidoreductase, at 831,268 to 833,034
_RS19870
Position (kb) 830
831
832 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 829.456 kb on + strand, within ABZR87_RS19855 at 829.457 kb on - strand, within ABZR87_RS19855 at 829.689 kb on - strand, within ABZR87_RS19855 at 829.713 kb on + strand, within ABZR87_RS19855 at 829.713 kb on + strand, within ABZR87_RS19855 at 829.713 kb on + strand, within ABZR87_RS19855 at 829.713 kb on + strand, within ABZR87_RS19855 at 829.714 kb on - strand, within ABZR87_RS19855 at 829.714 kb on - strand, within ABZR87_RS19855 at 829.714 kb on - strand, within ABZR87_RS19855 at 829.948 kb on + strand at 829.949 kb on - strand at 830.076 kb on + strand, within ABZR87_RS19860 at 830.076 kb on + strand, within ABZR87_RS19860 at 830.076 kb on + strand, within ABZR87_RS19860 at 830.077 kb on - strand, within ABZR87_RS19860 at 830.077 kb on - strand, within ABZR87_RS19860 at 830.115 kb on + strand, within ABZR87_RS19860 at 830.116 kb on - strand, within ABZR87_RS19860 at 830.290 kb on + strand at 830.290 kb on + strand at 830.290 kb on + strand at 830.290 kb on + strand at 830.290 kb on + strand at 830.291 kb on - strand at 830.347 kb on + strand at 830.347 kb on + strand at 830.377 kb on + strand at 830.421 kb on + strand at 830.469 kb on + strand at 830.469 kb on + strand at 830.469 kb on + strand at 830.470 kb on - strand at 830.764 kb on - strand, within ABZR87_RS19865 at 830.851 kb on - strand, within ABZR87_RS19865 at 830.874 kb on + strand, within ABZR87_RS19865 at 830.874 kb on + strand, within ABZR87_RS19865 at 830.874 kb on + strand, within ABZR87_RS19865 at 830.875 kb on - strand, within ABZR87_RS19865 at 831.115 kb on + strand, within ABZR87_RS19865 at 831.115 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.178 kb on - strand, within ABZR87_RS19865 at 831.178 kb on - strand, within ABZR87_RS19865 at 831.228 kb on - strand at 831.271 kb on + strand at 831.271 kb on + strand at 831.272 kb on - strand at 831.272 kb on - strand at 831.299 kb on + strand at 831.300 kb on - strand at 831.362 kb on + strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.500 kb on + strand, within ABZR87_RS19870 at 831.500 kb on + strand, within ABZR87_RS19870 at 831.501 kb on - strand, within ABZR87_RS19870 at 831.516 kb on - strand, within ABZR87_RS19870 at 831.633 kb on - strand, within ABZR87_RS19870 at 831.633 kb on - strand, within ABZR87_RS19870 at 831.672 kb on - strand, within ABZR87_RS19870 at 831.693 kb on - strand, within ABZR87_RS19870 at 831.749 kb on + strand, within ABZR87_RS19870 at 831.749 kb on + strand, within ABZR87_RS19870 at 831.749 kb on + strand, within ABZR87_RS19870 at 831.749 kb on + strand, within ABZR87_RS19870 at 831.749 kb on + strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.752 kb on + strand, within ABZR87_RS19870 at 831.752 kb on + strand, within ABZR87_RS19870 at 831.753 kb on - strand, within ABZR87_RS19870 at 831.854 kb on + strand, within ABZR87_RS19870 at 831.855 kb on - strand, within ABZR87_RS19870 at 832.008 kb on - strand, within ABZR87_RS19870 at 832.008 kb on - strand, within ABZR87_RS19870 at 832.008 kb on - strand, within ABZR87_RS19870 at 832.046 kb on + strand, within ABZR87_RS19870 at 832.046 kb on + strand, within ABZR87_RS19870 at 832.047 kb on - strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 829,456 + ABZR87_RS19855 0.59 -0.7 829,457 - ABZR87_RS19855 0.59 +0.9 829,689 - ABZR87_RS19855 0.76 +1.8 829,713 + ABZR87_RS19855 0.77 -1.0 829,713 + ABZR87_RS19855 0.77 -0.9 829,713 + ABZR87_RS19855 0.77 -0.3 829,713 + ABZR87_RS19855 0.77 -0.2 829,714 - ABZR87_RS19855 0.77 -3.8 829,714 - ABZR87_RS19855 0.77 +0.5 829,714 - ABZR87_RS19855 0.77 -0.3 829,948 + -3.9 829,949 - +2.5 830,076 + ABZR87_RS19860 0.17 +0.5 830,076 + ABZR87_RS19860 0.17 -0.7 830,076 + ABZR87_RS19860 0.17 +0.1 830,077 - ABZR87_RS19860 0.17 +2.6 830,077 - ABZR87_RS19860 0.17 -1.8 830,115 + ABZR87_RS19860 0.38 +3.9 830,116 - ABZR87_RS19860 0.38 +1.4 830,290 + -0.4 830,290 + -0.5 830,290 + +1.9 830,290 + +2.8 830,290 + -3.9 830,291 - -1.3 830,347 + -2.1 830,347 + +1.4 830,377 + -1.4 830,421 + +2.6 830,469 + -0.2 830,469 + +1.8 830,469 + +0.6 830,470 - +0.6 830,764 - ABZR87_RS19865 0.40 +1.1 830,851 - ABZR87_RS19865 0.51 -0.3 830,874 + ABZR87_RS19865 0.53 -0.1 830,874 + ABZR87_RS19865 0.53 -2.3 830,874 + ABZR87_RS19865 0.53 -0.1 830,875 - ABZR87_RS19865 0.53 +0.1 831,115 + ABZR87_RS19865 0.82 +1.1 831,115 + ABZR87_RS19865 0.82 -3.8 831,177 + ABZR87_RS19865 0.89 +1.1 831,177 + ABZR87_RS19865 0.89 -0.7 831,177 + ABZR87_RS19865 0.89 -0.2 831,177 + ABZR87_RS19865 0.89 +0.2 831,177 + ABZR87_RS19865 0.89 -2.2 831,177 + ABZR87_RS19865 0.89 +0.8 831,178 - ABZR87_RS19865 0.89 +1.5 831,178 - ABZR87_RS19865 0.89 +2.0 831,228 - +0.1 831,271 + -3.6 831,271 + +0.7 831,272 - +0.2 831,272 - -0.6 831,299 + -0.4 831,300 - +0.5 831,362 + +1.0 831,363 - -0.7 831,363 - -1.5 831,500 + ABZR87_RS19870 0.13 -2.3 831,500 + ABZR87_RS19870 0.13 +1.5 831,501 - ABZR87_RS19870 0.13 -2.0 831,516 - ABZR87_RS19870 0.14 +1.3 831,633 - ABZR87_RS19870 0.21 -3.4 831,633 - ABZR87_RS19870 0.21 -0.9 831,672 - ABZR87_RS19870 0.23 -0.9 831,693 - ABZR87_RS19870 0.24 +1.3 831,749 + ABZR87_RS19870 0.27 -0.3 831,749 + ABZR87_RS19870 0.27 -1.5 831,749 + ABZR87_RS19870 0.27 -1.0 831,749 + ABZR87_RS19870 0.27 +1.7 831,749 + ABZR87_RS19870 0.27 +2.7 831,750 - ABZR87_RS19870 0.27 -1.3 831,750 - ABZR87_RS19870 0.27 -0.2 831,750 - ABZR87_RS19870 0.27 -2.4 831,750 - ABZR87_RS19870 0.27 -0.0 831,750 - ABZR87_RS19870 0.27 -1.4 831,750 - ABZR87_RS19870 0.27 -4.2 831,750 - ABZR87_RS19870 0.27 +0.6 831,750 - ABZR87_RS19870 0.27 +0.7 831,752 + ABZR87_RS19870 0.27 -2.3 831,752 + ABZR87_RS19870 0.27 -2.8 831,753 - ABZR87_RS19870 0.27 +1.2 831,854 + ABZR87_RS19870 0.33 -3.5 831,855 - ABZR87_RS19870 0.33 -0.4 832,008 - ABZR87_RS19870 0.42 +0.2 832,008 - ABZR87_RS19870 0.42 -0.2 832,008 - ABZR87_RS19870 0.42 +0.0 832,046 + ABZR87_RS19870 0.44 +1.0 832,046 + ABZR87_RS19870 0.44 -1.8 832,047 - ABZR87_RS19870 0.44 +1.3 832,157 + ABZR87_RS19870 0.50 +0.4 832,157 + ABZR87_RS19870 0.50 -2.8 832,157 + ABZR87_RS19870 0.50 -2.6 832,157 + ABZR87_RS19870 0.50 -2.7 832,158 - ABZR87_RS19870 0.50 -0.2 832,158 - ABZR87_RS19870 0.50 -0.1 832,158 - ABZR87_RS19870 0.50 -2.7 832,158 - ABZR87_RS19870 0.50 +0.8
Or see this region's nucleotide sequence