Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19665 and ABZR87_RS19670 are separated by 76 nucleotides ABZR87_RS19670 and ABZR87_RS19675 are separated by 179 nucleotides ABZR87_RS19675 and ABZR87_RS19680 are separated by 350 nucleotides
ABZR87_RS19665: ABZR87_RS19665 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 786,658 to 788,181
_RS19665
ABZR87_RS19670: ABZR87_RS19670 - cold-shock protein, at 788,258 to 788,464
_RS19670
ABZR87_RS19675: ABZR87_RS19675 - cold-shock protein, at 788,644 to 788,847
_RS19675
ABZR87_RS19680: ABZR87_RS19680 - potassium transporter Kup, at 789,198 to 791,093
_RS19680
Position (kb) 788
789 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 787.690 kb on + strand, within ABZR87_RS19665 at 787.691 kb on - strand, within ABZR87_RS19665 at 787.691 kb on - strand, within ABZR87_RS19665 at 787.691 kb on - strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.823 kb on - strand, within ABZR87_RS19665 at 787.823 kb on - strand, within ABZR87_RS19665 at 787.930 kb on + strand, within ABZR87_RS19665 at 787.930 kb on + strand, within ABZR87_RS19665 at 787.930 kb on + strand, within ABZR87_RS19665 at 788.074 kb on + strand at 788.098 kb on + strand at 788.107 kb on + strand at 788.108 kb on - strand at 788.179 kb on + strand at 788.179 kb on + strand at 788.179 kb on + strand at 788.179 kb on + strand at 788.180 kb on - strand at 788.189 kb on + strand at 788.189 kb on + strand at 788.189 kb on + strand at 788.225 kb on - strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.262 kb on - strand at 788.262 kb on - strand at 788.262 kb on - strand at 788.310 kb on - strand, within ABZR87_RS19670 at 788.380 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.541 kb on + strand at 788.542 kb on - strand at 788.578 kb on + strand at 788.578 kb on + strand at 788.579 kb on - strand at 788.579 kb on - strand at 788.645 kb on + strand at 788.797 kb on - strand, within ABZR87_RS19675 at 788.841 kb on + strand at 788.841 kb on + strand at 788.841 kb on + strand at 788.842 kb on - strand at 788.873 kb on + strand at 788.893 kb on + strand at 788.893 kb on + strand at 788.894 kb on - strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 789.101 kb on - strand at 789.101 kb on - strand at 789.101 kb on - strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.303 kb on + strand at 789.304 kb on - strand at 789.304 kb on - strand at 789.304 kb on - strand at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.417 kb on + strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.418 kb on - strand, within ABZR87_RS19680 at 789.562 kb on - strand, within ABZR87_RS19680 at 789.562 kb on - strand, within ABZR87_RS19680 at 789.578 kb on + strand, within ABZR87_RS19680 at 789.578 kb on + strand, within ABZR87_RS19680 at 789.578 kb on + strand, within ABZR87_RS19680 at 789.579 kb on - strand, within ABZR87_RS19680 at 789.579 kb on - strand, within ABZR87_RS19680 at 789.579 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680 at 789.826 kb on - strand, within ABZR87_RS19680
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 787,690 + ABZR87_RS19665 0.68 -1.3 787,691 - ABZR87_RS19665 0.68 -0.4 787,691 - ABZR87_RS19665 0.68 -1.7 787,691 - ABZR87_RS19665 0.68 +0.1 787,822 + ABZR87_RS19665 0.76 +0.5 787,822 + ABZR87_RS19665 0.76 +1.0 787,822 + ABZR87_RS19665 0.76 +1.4 787,822 + ABZR87_RS19665 0.76 +1.0 787,822 + ABZR87_RS19665 0.76 +0.7 787,823 - ABZR87_RS19665 0.76 +0.5 787,823 - ABZR87_RS19665 0.76 +1.5 787,930 + ABZR87_RS19665 0.83 +1.7 787,930 + ABZR87_RS19665 0.83 -1.0 787,930 + ABZR87_RS19665 0.83 +1.6 788,074 + +0.8 788,098 + +2.1 788,107 + +1.3 788,108 - -0.9 788,179 + +1.4 788,179 + -0.7 788,179 + +0.7 788,179 + -1.8 788,180 - -2.8 788,189 + -1.4 788,189 + +1.4 788,189 + +1.0 788,225 - +0.6 788,261 + -0.3 788,261 + +1.4 788,261 + -0.5 788,261 + +1.2 788,262 - +3.3 788,262 - +1.1 788,262 - +1.6 788,310 - ABZR87_RS19670 0.25 +1.4 788,380 + ABZR87_RS19670 0.59 -4.1 788,430 + ABZR87_RS19670 0.83 +0.6 788,430 + ABZR87_RS19670 0.83 -0.4 788,430 + ABZR87_RS19670 0.83 +1.7 788,430 + ABZR87_RS19670 0.83 +0.7 788,541 + +0.6 788,542 - -3.0 788,578 + -1.5 788,578 + -0.2 788,579 - +0.5 788,579 - +2.8 788,645 + +0.5 788,797 - ABZR87_RS19675 0.75 -3.7 788,841 + -1.6 788,841 + +0.3 788,841 + +1.6 788,842 - +0.6 788,873 + -2.1 788,893 + -0.4 788,893 + +1.7 788,894 - -2.8 788,946 + +0.5 788,946 + +0.2 788,946 + -1.6 788,946 + +0.3 788,946 + +0.1 788,946 + +0.2 788,947 - +2.1 788,947 - -1.0 788,947 - -2.7 788,947 - +1.8 788,947 - -3.1 788,948 + -2.5 788,948 + +2.0 788,948 + -2.2 788,948 + +0.1 788,948 + -3.7 788,948 + -0.6 788,948 + -3.2 788,948 + -3.7 788,949 - +0.8 788,949 - -3.0 788,949 - +1.2 788,949 - -2.2 788,949 - +1.5 788,949 - -0.3 788,949 - +1.4 788,949 - +1.4 788,949 - -0.7 789,101 - +0.7 789,101 - -2.9 789,101 - -3.6 789,303 + -1.2 789,303 + -1.8 789,303 + -2.5 789,303 + -3.9 789,303 + -1.9 789,304 - -0.7 789,304 - -2.0 789,304 - -1.9 789,417 + ABZR87_RS19680 0.12 -1.8 789,417 + ABZR87_RS19680 0.12 -1.8 789,417 + ABZR87_RS19680 0.12 -1.9 789,417 + ABZR87_RS19680 0.12 -0.3 789,417 + ABZR87_RS19680 0.12 -3.5 789,418 - ABZR87_RS19680 0.12 -3.1 789,418 - ABZR87_RS19680 0.12 -2.6 789,418 - ABZR87_RS19680 0.12 -2.3 789,418 - ABZR87_RS19680 0.12 +0.6 789,418 - ABZR87_RS19680 0.12 -4.2 789,562 - ABZR87_RS19680 0.19 +0.9 789,562 - ABZR87_RS19680 0.19 -0.2 789,578 + ABZR87_RS19680 0.20 -3.5 789,578 + ABZR87_RS19680 0.20 +0.3 789,578 + ABZR87_RS19680 0.20 -3.6 789,579 - ABZR87_RS19680 0.20 -3.3 789,579 - ABZR87_RS19680 0.20 -1.2 789,579 - ABZR87_RS19680 0.20 +0.5 789,826 - ABZR87_RS19680 0.33 -3.5 789,826 - ABZR87_RS19680 0.33 -0.2 789,826 - ABZR87_RS19680 0.33 -2.5 789,826 - ABZR87_RS19680 0.33 -3.4
Or see this region's nucleotide sequence