Experiment: soil EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18950 and ABZR87_RS18955 are separated by 142 nucleotides ABZR87_RS18955 and ABZR87_RS18960 overlap by 46 nucleotides
ABZR87_RS18950: ABZR87_RS18950 - 3-keto-5-aminohexanoate cleavage protein, at 607,820 to 608,875
_RS18950
ABZR87_RS18955: ABZR87_RS18955 - AraC family transcriptional regulator, at 609,018 to 610,082
_RS18955
ABZR87_RS18960: ABZR87_RS18960 - MFS transporter, at 610,037 to 611,299
_RS18960
Position (kb) 609
610
611 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 608.241 kb on + strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.386 kb on - strand, within ABZR87_RS18950 at 608.430 kb on + strand, within ABZR87_RS18950 at 608.725 kb on - strand, within ABZR87_RS18950 at 608.808 kb on + strand at 608.822 kb on - strand at 608.822 kb on - strand at 608.822 kb on - strand at 608.889 kb on + strand at 608.889 kb on + strand at 608.890 kb on - strand at 608.915 kb on + strand at 608.915 kb on + strand at 608.915 kb on + strand at 608.915 kb on + strand at 608.915 kb on + strand at 608.916 kb on - strand at 608.918 kb on - strand at 608.918 kb on - strand at 608.929 kb on - strand at 608.967 kb on + strand at 608.967 kb on + strand at 608.984 kb on - strand at 609.054 kb on + strand at 609.055 kb on - strand at 609.055 kb on - strand at 609.354 kb on + strand, within ABZR87_RS18955 at 609.382 kb on + strand, within ABZR87_RS18955 at 609.382 kb on + strand, within ABZR87_RS18955 at 609.382 kb on + strand, within ABZR87_RS18955 at 609.383 kb on - strand, within ABZR87_RS18955 at 609.383 kb on - strand, within ABZR87_RS18955 at 609.383 kb on - strand, within ABZR87_RS18955 at 609.518 kb on + strand, within ABZR87_RS18955 at 609.518 kb on + strand, within ABZR87_RS18955 at 609.518 kb on + strand, within ABZR87_RS18955 at 609.519 kb on - strand, within ABZR87_RS18955 at 609.688 kb on + strand, within ABZR87_RS18955 at 609.689 kb on - strand, within ABZR87_RS18955 at 609.689 kb on - strand, within ABZR87_RS18955 at 609.733 kb on - strand, within ABZR87_RS18955 at 609.733 kb on - strand, within ABZR87_RS18955 at 609.882 kb on + strand, within ABZR87_RS18955 at 609.883 kb on - strand, within ABZR87_RS18955 at 609.883 kb on - strand, within ABZR87_RS18955 at 609.933 kb on + strand, within ABZR87_RS18955 at 609.935 kb on + strand, within ABZR87_RS18955 at 609.936 kb on - strand, within ABZR87_RS18955 at 609.936 kb on - strand, within ABZR87_RS18955 at 609.936 kb on - strand, within ABZR87_RS18955 at 610.224 kb on + strand, within ABZR87_RS18960 at 610.224 kb on + strand, within ABZR87_RS18960 at 610.224 kb on + strand, within ABZR87_RS18960 at 610.225 kb on - strand, within ABZR87_RS18960 at 610.225 kb on - strand, within ABZR87_RS18960 at 610.225 kb on - strand, within ABZR87_RS18960 at 610.225 kb on - strand, within ABZR87_RS18960 at 610.225 kb on - strand, within ABZR87_RS18960 at 610.225 kb on - strand, within ABZR87_RS18960 at 610.225 kb on - strand, within ABZR87_RS18960 at 610.500 kb on + strand, within ABZR87_RS18960 at 610.500 kb on + strand, within ABZR87_RS18960 at 610.500 kb on + strand, within ABZR87_RS18960 at 610.851 kb on + strand, within ABZR87_RS18960
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 1; outgrowth in LB remove 608,241 + ABZR87_RS18950 0.40 -1.4 608,242 - ABZR87_RS18950 0.40 +1.7 608,242 - ABZR87_RS18950 0.40 +0.4 608,242 - ABZR87_RS18950 0.40 -1.3 608,242 - ABZR87_RS18950 0.40 +1.1 608,386 - ABZR87_RS18950 0.54 -1.0 608,430 + ABZR87_RS18950 0.58 -1.0 608,725 - ABZR87_RS18950 0.86 +1.7 608,808 + -1.9 608,822 - -3.5 608,822 - +3.0 608,822 - -0.1 608,889 + +0.5 608,889 + +0.1 608,890 - +0.3 608,915 + +0.6 608,915 + +1.7 608,915 + +0.9 608,915 + -1.3 608,915 + -2.6 608,916 - +0.5 608,918 - +0.1 608,918 - +0.9 608,929 - +1.6 608,967 + -3.0 608,967 + -2.8 608,984 - -1.9 609,054 + -2.5 609,055 - -0.3 609,055 - -1.0 609,354 + ABZR87_RS18955 0.32 -2.9 609,382 + ABZR87_RS18955 0.34 -2.5 609,382 + ABZR87_RS18955 0.34 -0.0 609,382 + ABZR87_RS18955 0.34 +0.4 609,383 - ABZR87_RS18955 0.34 +0.6 609,383 - ABZR87_RS18955 0.34 +2.1 609,383 - ABZR87_RS18955 0.34 -1.6 609,518 + ABZR87_RS18955 0.47 +1.1 609,518 + ABZR87_RS18955 0.47 +0.8 609,518 + ABZR87_RS18955 0.47 +0.4 609,519 - ABZR87_RS18955 0.47 -0.5 609,688 + ABZR87_RS18955 0.63 -2.2 609,689 - ABZR87_RS18955 0.63 -3.7 609,689 - ABZR87_RS18955 0.63 -0.5 609,733 - ABZR87_RS18955 0.67 -2.4 609,733 - ABZR87_RS18955 0.67 +0.3 609,882 + ABZR87_RS18955 0.81 +1.8 609,883 - ABZR87_RS18955 0.81 -3.0 609,883 - ABZR87_RS18955 0.81 -3.4 609,933 + ABZR87_RS18955 0.86 +0.3 609,935 + ABZR87_RS18955 0.86 +0.8 609,936 - ABZR87_RS18955 0.86 -1.7 609,936 - ABZR87_RS18955 0.86 +0.3 609,936 - ABZR87_RS18955 0.86 +1.1 610,224 + ABZR87_RS18960 0.15 +0.4 610,224 + ABZR87_RS18960 0.15 -1.7 610,224 + ABZR87_RS18960 0.15 -0.3 610,225 - ABZR87_RS18960 0.15 +0.1 610,225 - ABZR87_RS18960 0.15 +2.0 610,225 - ABZR87_RS18960 0.15 -2.5 610,225 - ABZR87_RS18960 0.15 +0.9 610,225 - ABZR87_RS18960 0.15 -2.8 610,225 - ABZR87_RS18960 0.15 -3.9 610,225 - ABZR87_RS18960 0.15 +0.6 610,500 + ABZR87_RS18960 0.37 +2.0 610,500 + ABZR87_RS18960 0.37 -3.1 610,500 + ABZR87_RS18960 0.37 -1.2 610,851 + ABZR87_RS18960 0.64 +1.3
Or see this region's nucleotide sequence